Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00688 ATGTCGTCGTCGAATTCACCTTGCGCAGCGTGCAAGTTCTTGCGGAGGAAGTGCACGCAGGAGTGCGTTTTCGCGCCGTATTTCCCGCCGGACAACCCGCAGAGGTTCGCATACGTGCACAAGGTTTTCGGCGCCAGCAACGTCGCCAAGCTGCTGAACGAACTCAACGCCGCGCAGAGAGACGACGCCGTGAAGTCGTTGGCGTACGAGGCTGAGGCGCGTTTAAGAGACCCCGTCTACGGTTGCGTGGGTCTCATATCGGTGCTGCAGCACCGGCTCCGGCAGATCCAGGTGGAGCTCACCAACGCCAAGAAGGAGCTCGCCACCTACATTGGCCCTCAGGCACTGCAGGGTGTCCCAACCACCGCCATTCTCCAGCATCACCATTCCTTTGCCTCGCAGATGTTCCCTTACAACAGCGCCATGGCTGCTCCGCCAGCTATTGCTCATGGCGGACAGTTGATGATTCGCGACGCTCAGACTGCCCCTCCGACTCCGCAACAGCAGATCTTGGAGGCTCAGCAGCTGGCTGCTGCGGTGGTGGTGAGGGATCAACAAGATATGTTCAGAGGGTATGATCAGCATCATCAACAGCAAGAGTTTCTGAGGTTTAATGGTGGAGGGTTTGATATGGGTTCGGTTTCTTCCGGTGGTGGTGGGTACAGCCAGGTTAGTGGCGGTGGAAGTGGTGGCGGTTCTGGTGATCAGTTGTCTCCTTCGTTGGCTTTGGGGTCTTTTGACAATCCATACCATATGCAGCAAGGGGAAAGCCATGCTCACCATCTTCCTCTTCAGGCGCAGCTACTTCTCCCACCGCAGCAGAAGCAGGCTCAACAGCAAGCACAGTCACAGCATATTCCCGGCCACCACCACCAGCAACCTTCGGAAAGCGAGGAGTGTAGGAGTGTCGGTCCATCTTGTTGA 924 0.5714 MSSSNSPCAACKFLRRKCTQECVFAPYFPPDNPQRFAYVHKVFGASNVAKLLNELNAAQRDDAVKSLAYEAEARLRDPVYGCVGLISVLQHRLRQIQVELTNAKKELATYIGPQALQGVPTTAILQHHHSFASQMFPYNSAMAAPPAIAHGGQLMIRDAQTAPPTPQQQILEAQQLAAAVVVRDQQDMFRGYDQHHQQQEFLRFNGGGFDMGSVSSGGGGYSQVSGGGSGGGSGDQLSPSLALGSFDNPYHMQQGESHAHHLPLQAQLLLPPQQKQAQQQAQSQHIPGHHHQQPSESEECRSVGPSC 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00688 307 MobiDBLite consensus disorder prediction 272 290 - -
Aip05g00688 307 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Aip05g00688 307 MobiDBLite consensus disorder prediction 214 260 - -
Aip05g00688 307 MobiDBLite consensus disorder prediction 272 307 - -
Aip05g00688 307 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Aip05g00688 307 Coils Coil 86 106 - -
Aip05g00688 307 MobiDBLite consensus disorder prediction 216 243 - -
Aip05g00688 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 1 285 - -
Aip05g00688 307 PANTHER LOB DOMAIN-CONTAINING PROTEIN 36-LIKE 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00688 Aip-Chr5 8740972 8743294 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00688 1 230 AS2 family AT5G66870 55.785 3.29e-74 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Aip05g00688 LOB 1.7e-41 No_clan
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00688 05 8740972 8743294 Aip01g00889 01 16409484 16415209 PCT
Aip01g00888 01 16406172 16407293 Aip05g00688 05 8740972 8743294 PCT