Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00664 ATGTCACAGAGATCGGTGCCGGCGCCGTTCTTGACGAAGACGTATGAGTTGGTGGATGATCGTGCAACGGACGACGTGATTTCGTGGAGTGAGAGTGGCAACACTTTTGTGGTGTGGAAGCATGCCGATTTCGCTAAGGATTTGCTTCCCAATTATTTCAAGCACAACAACTTCTCCAGCTTTGTTCGCCAGCTCAACACCTATGGTTTTCGAAAGATTGTGCCAGACAAATGGGAATTTGCCAACGAACATTTTAAGCGAGGCCAAAAAGAACTTCTCTCGGAGATCAAACGCCGCAAGTCGGCGCACCCTGCGCCGCCGCCATCGGGGACCGAAAAATCCGGTGGCGACGGAAACTCTCTGTTGAACTCAGGCGGCGACGACATGGGATCTTCCTCCACCTCTTCACCTGATTCGAAGAACCCAGGATCTGTGGAAACAACAACAATAACAACAACAACAACTCCTCCTCCTCATCAGTGCGCGAATTTATCGAGCGAGAACGAGAAATTGAAGAAGGACAACGAGACGCTAAATTGCGAGCTGGCACGTGCGAAGCAGCAGTGCGATGAGTTGGTGGCTTTCTTGAGGGACTGCCTTAAGGTGTGTCCTGATCAGATCAACCGCATCATGAGGCAAGGAAAATGCGGGTCCACCCGTGATCCGGTGCAATCTGATGACACTCTAGTTGATGATGACGACAAACAAGTTGGTGAGGCCGCTGGACCCAGCACTTTGAAATTGTTTGGTGTTTGGTTGAAAGAGGAGAAGCCTAACAACAACCACAAGAGAGGGCGCCAAGGCCCAATGGGCTTTGATGGGCCTCCTGCAAAGGAGATGAAGAAGACTACTACTACAACTAATAGTAATAGTGTTGTTGACTTTGGTGGTTCCAATGTTAAGGTGATGATGAAGAGCAGCAAGGTCTGTAGCTGA 936 0.4979 MSQRSVPAPFLTKTYELVDDRATDDVISWSESGNTFVVWKHADFAKDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDKWEFANEHFKRGQKELLSEIKRRKSAHPAPPPSGTEKSGGDGNSLLNSGGDDMGSSSTSSPDSKNPGSVETTTITTTTTPPPHQCANLSSENEKLKKDNETLNCELARAKQQCDELVAFLRDCLKVCPDQINRIMRQGKCGSTRDPVQSDDTLVDDDDKQVGEAAGPSTLKLFGVWLKEEKPNNNHKRGRQGPMGFDGPPAKEMKKTTTTTNSNSVVDFGGSNVKVMMKSSKVCS 311
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00664 311 Coils Coil 161 188 - -
Aip05g00664 311 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 2 285 IPR027725 -
Aip05g00664 311 ProSitePatterns HSF-type DNA-binding domain signature. 49 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00664 311 SMART hsfneu3 6 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00664 311 MobiDBLite consensus disorder prediction 98 170 - -
Aip05g00664 311 MobiDBLite consensus disorder prediction 257 292 - -
Aip05g00664 311 MobiDBLite consensus disorder prediction 113 165 - -
Aip05g00664 311 PANTHER HEAT STRESS TRANSCRIPTION FACTOR B-1 2 285 - -
Aip05g00664 311 Pfam HSF-type DNA-binding 10 99 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00664 311 SUPERFAMILY "Winged helix" DNA-binding domain 7 99 IPR036390 -
Aip05g00664 311 Gene3D - 2 100 IPR036388 -
Aip05g00664 311 PRINTS Heat shock factor (HSF) domain signature 10 33 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00664 311 PRINTS Heat shock factor (HSF) domain signature 48 60 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00664 311 PRINTS Heat shock factor (HSF) domain signature 61 73 IPR000232 GO:0003700|GO:0006355|GO:0043565
Aip05g00664 311 MobiDBLite consensus disorder prediction 215 240 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00664 Aip-Chr5 8402578 8405258 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00664 2 311 HSF AT4G36990 48.287 2.54e-81 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Aip05g00664 HSF_DNA-bind 7.9e-33 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00664 K09419 - gmx:100791543 360.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00664 05 8402578 8405258 Aip05g00664 05 8402578 8405258 ECH