Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00656 ATGACGAGGGACCGGCCCAATGTGGGATCGGATCCGATTGGGCCCGGTCCGCAGTTCCGAAATGCGAATAGTGGGCATTGGGTGAAAGGAGAAGGGTGCGGAGGGAGAGAAGAGAAAGAGAAGAAAGAACAGAGAAAGACAGAGAGAAGGGAGAGAGAGAAACCGAGCGAGCGAGATCTCTGTATTAGGGTTCCCAAATTCCCCCATGTGCAAGGAGGAGGCGAGTGTGAGGGATTTAGAGAGAGAAGAGAGGCACTTTCCCTCTTTCACTGCCCTACCTTCAAGTCTCTGATGGAGCAGCGAAAGCTTGTGGTTTTGGGTATTCCATGGGACGTGGACACTGAGGGCTTGAGGGAATACATGAGCAAGTACGGTGAATTGGAAGATTGTATTGTCATGAAGGAGCGATCAACTGGACGATCTCGTGGATTTGGATATGTTACATTTGCTTCAGTGGATGATGCTAAGGATGTTCTATCAGGTGAACATGTTCTTGGCAACAGGATGCTGGAAGTCAAAGTGGCCACACCAAAGGAGGAGATGAGAGCACCAGCCAAAAAAGTAACCAGAATATTTGTAGCCAGGATTCCACAATCAGTAACAGAAGCATCTTTTAGAAGTCATTTTGAGAAATATGGTGATATAACAGATCTGTACATGCCAAAGGATCAAGGATCAAAAATGCATCGTGGAATTGGTTTTATCACCTTTGCAAGTGCAGATTCTGTCGAGAGTTTGATGGCAGAAACCCATGAACTGGGAGGTTCTACCGTGGTGGTTGATCGAGCTACACCCAAGGATGATGACTTCAAGCCAGCAGGCAGAATGCCACAGGGAGGGTATGGTGCATATAATGCTTATATTTCTGCAGCAACTAGATATGCAGCACTTGGTGCTCCTACTTTGTATGATCATCCAGGCCCAGTCTACGGAAGGGGAGAGCCATCTCGTGGAATTGGTAAAAAGATTTTTGTTGGCCGACTTCCCCCAGAGGCAACTTCTGAGGATCTTCGTCAATATTTTGGAAGATTTGGCCGTATATTAGATGTTTACGTTCCCAGGGATCCTAAGAGATCAGGTCATAGAGGTTTTGGATTTGTTACTTTTGCTGAAGATGGTGTAGCAGATCGTGTCTCACGAAGGCCTCATGAAATTTGTGGACAACAGGTAGCATTAGATTCAGCCACACCTGTTGATGATGCAAGTCCGAGTGAGAATTTTATGATGAATGGCGTGGGTTCTTTTGGGGGTTATGGAGGTCCTATGCGAACTTATGGGAGGATGTATGGTAGCCTGGACTTCGATGATTGGGGTTATGGAATTCCCAGTGGGAGGCCATCAAGAGCAGATTGGAGGTATAGACCATACTAG 1371 0.4675 MTRDRPNVGSDPIGPGPQFRNANSGHWVKGEGCGGREEKEKKEQRKTERREREKPSERDLCIRVPKFPHVQGGGECEGFRERREALSLFHCPTFKSLMEQRKLVVLGIPWDVDTEGLREYMSKYGELEDCIVMKERSTGRSRGFGYVTFASVDDAKDVLSGEHVLGNRMLEVKVATPKEEMRAPAKKVTRIFVARIPQSVTEASFRSHFEKYGDITDLYMPKDQGSKMHRGIGFITFASADSVESLMAETHELGGSTVVVDRATPKDDDFKPAGRMPQGGYGAYNAYISAATRYAALGAPTLYDHPGPVYGRGEPSRGIGKKIFVGRLPPEATSEDLRQYFGRFGRILDVYVPRDPKRSGHRGFGFVTFAEDGVADRVSRRPHEICGQQVALDSATPVDDASPSENFMMNGVGSFGGYGGPMRTYGRMYGSLDFDDWGYGIPSGRPSRADWRYRPY 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00656 456 MobiDBLite consensus disorder prediction 1 57 - -
Aip05g00656 456 PANTHER OS01G0945800 PROTEIN 100 456 - -
Aip05g00656 456 SUPERFAMILY RNA-binding domain, RBD 321 421 IPR035979 GO:0003676
Aip05g00656 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 321 397 IPR000504 GO:0003723
Aip05g00656 456 Gene3D - 34 181 IPR012677 -
Aip05g00656 456 MobiDBLite consensus disorder prediction 31 57 - -
Aip05g00656 456 SUPERFAMILY RNA-binding domain, RBD 186 284 IPR035979 GO:0003676
Aip05g00656 456 Gene3D - 182 271 IPR012677 -
Aip05g00656 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 189 265 IPR000504 GO:0003723
Aip05g00656 456 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 101 177 IPR000504 GO:0003723
Aip05g00656 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 323 376 IPR000504 GO:0003723
Aip05g00656 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 191 249 IPR000504 GO:0003723
Aip05g00656 456 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 103 160 IPR000504 GO:0003723
Aip05g00656 456 SUPERFAMILY RNA-binding domain, RBD 99 183 IPR035979 GO:0003676
Aip05g00656 456 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 87F-RELATED 100 456 - -
Aip05g00656 456 Gene3D - 320 401 IPR012677 -
Aip05g00656 456 SMART rrm1_1 102 173 IPR000504 GO:0003723
Aip05g00656 456 SMART rrm1_1 190 261 IPR000504 GO:0003723
Aip05g00656 456 SMART rrm1_1 322 393 IPR000504 GO:0003723
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00656 Aip-Chr5 8298956 8303203 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00656 102 390 Eukaryotic Initiation Factors Gene Family AT2G23350 26.174 1.25e-15 77.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00656 K14411 - gmx:100795240 671.774
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00656 05 8298956 8303203 Aip05g00656 05 8298956 8303203 ECH