Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00654 ATGGATGTGGACATATTCAAAACCTCTACTGCTAGTGACAGCATGGACATGATGGCAATGATGATGCAGCAGATGGAAAAGCTTCCTCCTCCTGAATTATCTGAACCTCCTTTTTATACCACCTACCCATCACAAACCGACTTCCATAATAACAATAATGTAGTGCCTCAAGTTGAACCAAACTTGATTAATCCCACTTTCATCTTCCAACAACAACATTCCATGGCACCACCACCTGTAGTCACCAGCAACAACGATGATATTATTACTTCTTCTTTTCCCTACCCTCCTCCTCCTCCTCCTCCTTCTTGTTCCGATAGCAGCAACAAGAAGAACTCGATGGCTGCCATGAGGGAGATGATATTCCGGGTGGCGGTTATGCAACCGGTTCACATAGACCCGGAGTCTATAAAGCCACCAAAGAGGAGGAACGTGAAGATCTCAAAGGATCCTCAGAGCGTGGCGGCGAGGCACAGGAGGGAGCGGATAAGCGAGAGGATAAGGATTCTTCAGAGATTAGTCCCCGGTGGAACTAAAATGGACACAGCTTCCATGTTGGATGAGGCCATTCACTACGTCAAGTTCTTGAAGAAGCAAGTGCAGACTCTCGAACAAGCAGGAGGGGGAAGAACATGTAATAATAATGGCTTCACGGGATTCTCATCATCATCATCATCCATTAATGCCAGTAATTATCCTGCTATGGTTAAAGGTTGCCACCAACCTTATCCTCCCATGCTGATGGGTTCTTCTGCTTCAAAACAATTGCTCAGCTGA 777 0.4595 MDVDIFKTSTASDSMDMMAMMMQQMEKLPPPELSEPPFYTTYPSQTDFHNNNNVVPQVEPNLINPTFIFQQQHSMAPPPVVTSNNDDIITSSFPYPPPPPPPSCSDSSNKKNSMAAMREMIFRVAVMQPVHIDPESIKPPKRRNVKISKDPQSVAARHRRERISERIRILQRLVPGGTKMDTASMLDEAIHYVKFLKKQVQTLEQAGGGRTCNNNGFTGFSSSSSSINASNYPAMVKGCHQPYPPMLMGSSASKQLLS 258
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00654 258 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 151 205 IPR036638 GO:0046983
Aip05g00654 258 MobiDBLite consensus disorder prediction 83 112 - -
Aip05g00654 258 SMART finulus 153 202 IPR011598 GO:0046983
Aip05g00654 258 PANTHER BASIC HELIX-LOOP-HELIX (BHLH)-LIKE PROTEIN 1 242 - -
Aip05g00654 258 Coils Coil 186 206 - -
Aip05g00654 258 CDD bHLH_AtIND_like 148 204 - -
Aip05g00654 258 Pfam Helix-loop-helix DNA-binding domain 157 196 IPR011598 GO:0046983
Aip05g00654 258 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Aip05g00654 258 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 242 IPR045843 GO:0003700|GO:0006355
Aip05g00654 258 Gene3D - 146 210 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00654 Aip-Chr5 8276060 8277470 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00654 17 216 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G50330 56.667 7.47e-53 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00654 HLH 1.6e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00654 - - gmx:100796649 222.246
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00654 05 8276060 8277470 Aip05g00654 05 8276060 8277470 ECH