Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00652 ATGGACTGGATTCGAGGACCAACCCTCGGCAGTGGAAGCTTCGCCACCGTCAGTTTAGCCACACCCAAGAACCCTTCCCTTCCGTTCCACATTCCGGTTGCCGTTAAGTCCTCCGATCGTTTCACCTCCTTCCTCCTTGTTAACGAGGAACACGTCCTTAACCGCCTCGGTTCTTCTTGTCCTCGAATCGTTAAGTGCTTGGGTCACGACACTACGGTCGAAAACGGTGAGTCGTTTTACAACATCTTCCTCGAATATGCTTCCAACGGTACGCTCGCTGATCAGATGAAGAAGAATCAAGGTGGGAGGTTCGATGAGAAACAAGTAAGAAGGTACGCGAGGTCCGTCATGGAAGGGTTGAAGCACATTCACGAGAATGGGTTCATTCACTGCGATATTAAGCTTCAGAACATGCTTGTGTTCGAAGATGGCGAGGTGAAGATCTCGGATTTCGGGCTCGCGAAGGAGAAAGGTGCGACAGTGCAGCGTGGAGACAAGAAGTGGGAGTGCAGGGGAACGCCTCTCTACATGTCCCCTGAGTCGGTGAATGATAACGAGTACGAGTCTCCGGCGGATATATGGGCCGTTGGATGCGCCGCCGTGGAGATGCTCACCGGAAAGCCAGCGTGGAATGTTAAGAGTGGGTCCAACATGTGGTCGCTGCTAATTCGGATTGGAGTCGGTGAAGAAATTCCGGTGATTCCGGAGGACTTGTCCGAACAGGGGAAGGACTTTTTGAGAAAGTGTTTCGTTAAGGATCCCAGGGAGAGGTGGACGGCAGAGATGCTCCTCAACCACCCGTTTCTCGCCGAAGACAGCCATGATGCTTTGATTCATAACGAAATCTCGCCCAGAAGTAACTTTGACTTTCCTGATTGGGATTCCACTTCGACGGTGACTGATTCTGCTGTCACCACTGTTTCGTCGCCGGGGGATTGGCTACCACGGCTAGTGACGGAGCAGGGATCGCCGGATTGGTCAGAATCGGAGGGCTGGATAAGTGTTCGGAGAAGAGTTATCCTGGAAGCTTCGTTAGCAGTGGGATCTTAG 1050 0.5238 MDWIRGPTLGSGSFATVSLATPKNPSLPFHIPVAVKSSDRFTSFLLVNEEHVLNRLGSSCPRIVKCLGHDTTVENGESFYNIFLEYASNGTLADQMKKNQGGRFDEKQVRRYARSVMEGLKHIHENGFIHCDIKLQNMLVFEDGEVKISDFGLAKEKGATVQRGDKKWECRGTPLYMSPESVNDNEYESPADIWAVGCAAVEMLTGKPAWNVKSGSNMWSLLIRIGVGEEIPVIPEDLSEQGKDFLRKCFVKDPRERWTAEMLLNHPFLAEDSHDALIHNEISPRSNFDFPDWDSTSTVTDSAVTTVSSPGDWLPRLVTEQGSPDWSESEGWISVRRRVILEASLAVGS 349
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00652 349 SMART serkin_6 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00652 349 Pfam Protein kinase domain 7 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00652 349 Gene3D Transferase(Phosphotransferase) domain 1 3 308 - -
Aip05g00652 349 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 1 306 - -
Aip05g00652 349 ProSiteProfiles Protein kinase domain profile. 3 269 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00652 349 CDD STKc_MAPKKK 2 269 - -
Aip05g00652 349 ProSitePatterns Protein kinases ATP-binding region signature. 9 36 IPR017441 GO:0005524
Aip05g00652 349 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE KINASE KINASE 20 1 306 - -
Aip05g00652 349 SUPERFAMILY Protein kinase-like (PK-like) 3 315 IPR011009 -
Aip05g00652 349 ProSitePatterns Serine/Threonine protein kinases active-site signature. 128 140 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00652 Aip-Chr5 8220863 8222201 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00652 1 336 MAP Kinase Kinase Kinase AT5G67080 54.286 5.58e-128 369
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Aip05g00652 Pkinase 2.3e-54 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00652 - - aip:107641670 680.248
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00652 05 8220863 8222201 Aip05g00652 05 8220863 8222201 ECH
Aip05g00652 05 8220863 8222201 Aip01g00951 01 18115415 18116841 PCT