Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00647 ATGTCAGACGAAGAAGCTGCTGCAACTACCGCCGCCGGTAGGAGAAGGACCAGAGGTCCCGCTTCCTCCGCCCGCAGCGAGGCCCTAGAGCGTCTCAAAGCCCGTGTCCGCGGCGGGCCCCAGATCAGGCTCGAAAACCCTATCTACGATACTGTCGAGGAAGAAGAGTACAACGCCCTTGTCGCCAAGCGCCGCGAGCAGGCCCGTGCCTTCATCGTTGACGACGATGGCCTTGGCTACGGCGATGAGGGGGAGGAAGAGGACTGGTCTAAGGAAGGCGTCTCTCTCTCCTCTGACGAATCCGATGGCGCCGAAAATGAAGCCAGGCCAAAGCGGAAGAAGCTTGAAAAGAAAGAACATAATCCCAACCAGAAACGCACATCGGCTGCACTTTCCGCCGCCGCTGTTGGCGCCCAGCGGCTATCCTCGATGTTCACCTCATCGCTGTTCAAGAAGAGCAGGGACGACAAGGCCCCCGACAGCATCGTTGACGATGTTCTGGCGGAGTTTGCAGCCGACGAGACCGATAGGGAACGGCGGAGAAGAATCCATCCGAAAGCCATTCCCAATTCGAATTCAAATTCATCCTCTGCTACAAACGATGCTCTGCGGATTAATCGCGATTTCGTTAGCAATTCGTCAATTGTTGGAGCATCTGATTTGATGAGAGGTTCTTCGTTGCTCGACACTGCTGTAAATTGTGATGTTGAGTCCGTTAGAGTTGTTAGCAATGACGTCAGTGATTTAGGTTCAGAGCAGAAGAAATGCGAGGCAGTTAAAGAAAACGAGCTTTCAATTGAATGCTCGGATAATGAGAAAATTTGTAGTTCTGAGAATGGTGATGCATCAATTGAGCAAGTTCCGAGTAATGTTAATGTTTGTAAGGAGGAAGTTGTGAAGGACTCTAAGGCAGAGGAAAAACCTGTTGCTGTGAAAAAGGAGTTGTTTACTTTGAATGCAAAGCTTAAGGAAGAAAAAGAGGACCCTGCGTTGAGTGCTACTGCGGGTTGGCAAGCAGTGAGGAATGGTGGTGCAGCGAATGCAAATGTTGGGGATTCGAAAGCATTGAGAGAGGCTTTGCATAAGGAAGAACACTCGGAGTTCAATCTGGAGGAAGATGGTTCGCTACCTTTCTACATACTGGATGCCTATGAGGAGTTTAATGGAGCGAACAGGGGAACACTTTATTTATTTGGGAAGGTTAAAGCCGGGAATTCGTATCAGAGTTGTTGTGTTGTTGTGAAGAACATGCAAAGATGTGTCTATGCCATTCCAAGTCACCCTATACATCTTACTGATGAAATGGTGAAACTTGAGAAAGATGCTAAAAAATCTGCAGATTTCCATAAAAAGCTGCAAGATGCAGTATCTGGTTTAAAGAACGAGTTAGCAAAACATCTTCTGAACTTGAATGTTTCATGCTTTAGTATGGCTCCTGTTAAGAGGAAGTATGCATTTGAAAGGATCGAAATTCCTTCTGGTGAAAGTTATGTGCTTAAAATCAGTTATCCATTCAAGGATCAAGTACTTCCTGCGGACCTGAAAGGAGAAAGTTTCTCTGGTCTTTTAGGAACTCATTACAGTGCTCTGGAGCTTTTTCTGGTTAAAAGAAAGATTAAGGGACCCTCGTGGCTACAGGTTTCGAACTTTTCAAACTGCCCAACTTCTGAGAGGGAAAGATTTGTTAGCTGGTGCAAATTTGAAGTGATTGTTGACTCCCCTAAAGACATCAGGGTTTCAACTTCATCAAAAATCAGTTTTGAGATTCCTCCTGTGGTTGTCACAGCAATAAATTTGAAAACAACCATAAATGAAAAACAGAACGTAAATGAGATTGTATCTGCATCTATAGTCTGCTGCAATATGGTTAAGATTGACACACCTATGTTGGCTTCAGAATGGAAGAGACCTGGAATGCTTACCCATTTTACTGTCATTCGTAAAATTGATGGGAATATATTTCCACTGGGGTTCAGCAAGGAGGTTACAGAGAGAAACTCAAAAGCTGGGTCAAATGTTCTGTGTGTTGAAAGCAGTGAAAGAGCTTTGCTGAATCGCCTGATGACAGAATTACACAAGTTGGATAGCGATGTTCTTGTTGGGCATAATATATCTGGATTTGACCTGGAGGTACTCCTCCATAGATCCCAGGCTTGCAAAGTACCAAGCAACATGTGGTCTAAACTAGGCCGCCTCAAGCGTTCTGCATTGCCTAGGCTTGATAGAGGAAGCAAGGCATTTGGTTCTGGAGCTCGTCCTGCTGTCATGTCTTGTATGTCTGGCCGGCTTCTTTGTGATACATTCTTGTGTTCCCGTGATCTGCTCAAAGAGGTCAGTTATTCATTAACTGAACTCACAAAAACGCAGCTGAAGAAGTTTAGGAAGGAAGTTGCTCCACATGATGTTCCAAAGAAGTTCCAATCAGCTGAATCCCTAATTGAGCTTATTGAATGTAGTGAAACGGATGCATGGTTGTCCATGGAACTCATGTTTCATTTGAGTGTTCTTCCTCTCACCCGCCAGCTGACTAATATTAGTGGTAATCTGTGGGGGAAAACTCTTCAGGGTGCTCGGGCACAGAGAGTGGAGTTTCTTTTGTTGCATGCTTTCCATGCAAAGAAATATATGGTGCCAGACAAAATTCCAAACTATGCAAAAGAAACAACATTGACGAAACGCAAAGTAGCTCATGGTGTTGAGGATAGCAACTTAGAAGAAGCAGATGGTAACGAGGCAAACTATGATAATGATGCTGCCGATACTGATAATAAGAAAAGCAAAAAGGCTCCTTCTTATGCTGGAGGTCTGGTATTAGAGCCAAAGAAGGGACTATATGACAAATATATACTACTTCTGGACTTCAATAGTCTTTATCCTTCTATCATTCAGGAATATAATATATGCTTTACCACTGTTGAAAGATCTCAAGGTGCATCATTTTCCCGTTTACCATCCAGTCTAGAAACTGGGGTCTTGCCGGAGCTGTTGAAAAATCTGGTTGAAAGGAGGAGATTGGTAAAAAAGTGGATGAAGAAAGCATCTGGTCTTAAAGTGCAGCAACTGGACATTCAGCAGCAAGCATTGAAGCTTACTGCAAACAGTATGTATGGATGCCTAGGATTTTCCAATTCAAGATTTTATGCAAAGCCAATTGCCGAACTTATAACCCTACAAGGAAGGGAGATACTGCAGAGTACTGTTGATCTTGTTCAGAATAACTTGAACTTAGAGGTCATATATGGTGATACTGATTCAATAATGATATACAGTGGTCTAGATGATATTGCAAAAGCAAAAGCAATGGCTTCAAAAGTTATTCAAGAGGTCAATAAGAAATATAGGTGCTTGGAAATTGATCTTGATGGTTTGTACAAGAGGATGCTACTACTTAAGAAAAAGAAATATGCAGCTGTTAAAGTGCAGTTCAACGATGATACTCCATATGAGGTTATTGAACGTAAAGGTCTTGATATTGTCCGCCGGGATTGGAGCTTATTAGCTAAAGAATTGGGTGATTTTTGCTTGACTCAAATTTTGTCAGGAGGATCATGTGAAGATGTTGTTGAATCAATTCACAGTTATCTCATGCAGGAGCAAGAAAAAATGAGGAGTGGACAAGTACCATTGGAGAAATATGTCATCAATAAAACATTGACTAAACCTCCGGAGGCTTATCCTGATGCCAAAAACCAGCCACATGTTCTTGTGGCACAAAGAATGAAGCAACAAGGTTACTCCTCTGGTTGTTCTGTTGGTGATACAATCCCTTACATAATTTGCTATGAAGAGCAGGGCTGTAGTTCAGGTAGTGCAACAGGTATTGCTCAGCGCGCAAGGCATCCCGATGAACTAAAACAAGAGCAAGGGAAATGGCTTATTGACATTGAGTACTATTTGTCACAACAGATTCATCCAGTGGTATCACGTCTTTGTGCATCAATCCAGGGCACAAGCCCAGAAAGACTGGCTGACTGTTTAGGGCTTGACTCATCAAAGTTTCAACATAAATCAAGTGAAGCTCCAAGTAGTGATCCTACAAGCTCACTTTTATTCGCTTCTGATGACGAAGAAAGGTACAGGGGATGTGAGCCACTCGTATTGTGTTGCCCCAGCTGCTCTGATTCTTTTGACTGCCCACCTGTTTTTAAGTCAATTTGTTTGTTGGGAAGTGAAAAGATAACCAGCTCAGGCACGGAGGAATCCAGTTACAATTTCTGGCATAAACTGCGTTGTTCCAAATGCCTGGAAGATGGTGTTGGAAGAATATCTCCTGCAATGCTAACCAATCAGGTCAAAATGCAAGCAGAGAAGTTTGTTTTAATGTACTACAGAGGTGTACTGATGTGTGATGATGAAACGTGTAAGCATACGACACGCAGTATCAACCTTAAGTTGGTGGGTGATTCTGAGAGAGGAACTGTTTGTCCAAATTATCCTCGATGCAACGGCCGTCTCCACAGAAAGTACACCGAGGCAGACTTGTACAAGCAGCTCTCGTATTTCTGCCATGTGTTGAATACTTTTTGCAGTATGGAGAAGATGGAGGCTAAATCTAGGATGCTAATTGAGAAAGAGTTGATGAAGATTAGACCAATGGTTGATCTAGCAGCATCCACGGTACAGAAGTTAAGAGACCGTTGTGCCTACGGTTGGGTGAATTTGCAGGACTTTGTTGTTCCTGTTTAA 4686 0.4334 MSDEEAAATTAAGRRRTRGPASSARSEALERLKARVRGGPQIRLENPIYDTVEEEEYNALVAKRREQARAFIVDDDGLGYGDEGEEEDWSKEGVSLSSDESDGAENEARPKRKKLEKKEHNPNQKRTSAALSAAAVGAQRLSSMFTSSLFKKSRDDKAPDSIVDDVLAEFAADETDRERRRRIHPKAIPNSNSNSSSATNDALRINRDFVSNSSIVGASDLMRGSSLLDTAVNCDVESVRVVSNDVSDLGSEQKKCEAVKENELSIECSDNEKICSSENGDASIEQVPSNVNVCKEEVVKDSKAEEKPVAVKKELFTLNAKLKEEKEDPALSATAGWQAVRNGGAANANVGDSKALREALHKEEHSEFNLEEDGSLPFYILDAYEEFNGANRGTLYLFGKVKAGNSYQSCCVVVKNMQRCVYAIPSHPIHLTDEMVKLEKDAKKSADFHKKLQDAVSGLKNELAKHLLNLNVSCFSMAPVKRKYAFERIEIPSGESYVLKISYPFKDQVLPADLKGESFSGLLGTHYSALELFLVKRKIKGPSWLQVSNFSNCPTSERERFVSWCKFEVIVDSPKDIRVSTSSKISFEIPPVVVTAINLKTTINEKQNVNEIVSASIVCCNMVKIDTPMLASEWKRPGMLTHFTVIRKIDGNIFPLGFSKEVTERNSKAGSNVLCVESSERALLNRLMTELHKLDSDVLVGHNISGFDLEVLLHRSQACKVPSNMWSKLGRLKRSALPRLDRGSKAFGSGARPAVMSCMSGRLLCDTFLCSRDLLKEVSYSLTELTKTQLKKFRKEVAPHDVPKKFQSAESLIELIECSETDAWLSMELMFHLSVLPLTRQLTNISGNLWGKTLQGARAQRVEFLLLHAFHAKKYMVPDKIPNYAKETTLTKRKVAHGVEDSNLEEADGNEANYDNDAADTDNKKSKKAPSYAGGLVLEPKKGLYDKYILLLDFNSLYPSIIQEYNICFTTVERSQGASFSRLPSSLETGVLPELLKNLVERRRLVKKWMKKASGLKVQQLDIQQQALKLTANSMYGCLGFSNSRFYAKPIAELITLQGREILQSTVDLVQNNLNLEVIYGDTDSIMIYSGLDDIAKAKAMASKVIQEVNKKYRCLEIDLDGLYKRMLLLKKKKYAAVKVQFNDDTPYEVIERKGLDIVRRDWSLLAKELGDFCLTQILSGGSCEDVVESIHSYLMQEQEKMRSGQVPLEKYVINKTLTKPPEAYPDAKNQPHVLVAQRMKQQGYSSGCSVGDTIPYIICYEEQGCSSGSATGIAQRARHPDELKQEQGKWLIDIEYYLSQQIHPVVSRLCASIQGTSPERLADCLGLDSSKFQHKSSEAPSSDPTSSLLFASDDEERYRGCEPLVLCCPSCSDSFDCPPVFKSICLLGSEKITSSGTEESSYNFWHKLRCSKCLEDGVGRISPAMLTNQVKMQAEKFVLMYYRGVLMCDDETCKHTTRSINLKLVGDSERGTVCPNYPRCNGRLHRKYTEADLYKQLSYFCHVLNTFCSMEKMEAKSRMLIEKELMKIRPMVDLAASTVQKLRDRCAYGWVNLQDFVVPV 1561
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00647 1561 SUPERFAMILY DNA/RNA polymerases 925 1329 IPR043502 -
Aip05g00647 1561 Pfam DNA Polymerase alpha zinc finger 1354 1557 IPR015088 GO:0003887|GO:0006260
Aip05g00647 1561 Gene3D Helix hairpin bin 988 1039 - -
Aip05g00647 1561 MobiDBLite consensus disorder prediction 897 931 - -
Aip05g00647 1561 MobiDBLite consensus disorder prediction 1 42 - -
Aip05g00647 1561 CDD POLBc_alpha 925 1329 IPR045846 GO:0003887|GO:1902975
Aip05g00647 1561 Gene3D Palm domain of DNA polymerase 918 1142 IPR023211 -
Aip05g00647 1561 MobiDBLite consensus disorder prediction 75 133 - -
Aip05g00647 1561 MobiDBLite consensus disorder prediction 177 199 - -
Aip05g00647 1561 Gene3D - 1156 1342 IPR042087 -
Aip05g00647 1561 PRINTS DNA-directed DNA-polymerase family B signature 1078 1086 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aip05g00647 1561 PRINTS DNA-directed DNA-polymerase family B signature 949 962 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aip05g00647 1561 PRINTS DNA-directed DNA-polymerase family B signature 1025 1037 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aip05g00647 1561 SUPERFAMILY Ribonuclease H-like 372 878 IPR012337 -
Aip05g00647 1561 Coils Coil 449 469 - -
Aip05g00647 1561 Gene3D DNA Polymerase alpha, zinc finger 1353 1546 IPR038256 -
Aip05g00647 1561 Pfam DNA polymerase family B, exonuclease domain 407 784 IPR006133 -
Aip05g00647 1561 TIGRFAM pol2: DNA polymerase (pol2) 48 1311 - -
Aip05g00647 1561 SMART polmehr3 590 1092 IPR006172 GO:0000166|GO:0003676|GO:0003887
Aip05g00647 1561 Gene3D - 590 904 IPR036397 GO:0003676
Aip05g00647 1561 Pfam DNA polymerase alpha subunit p180 N terminal 35 89 IPR024647 -
Aip05g00647 1561 ProSitePatterns DNA polymerase family B signature. 1080 1088 IPR017964 GO:0000166|GO:0003676
Aip05g00647 1561 Gene3D - 418 540 - -
Aip05g00647 1561 Coils Coil 1106 1126 - -
Aip05g00647 1561 Gene3D - 378 576 - -
Aip05g00647 1561 Pfam DNA polymerase family B 849 1313 IPR006134 GO:0000166|GO:0003677
Aip05g00647 1561 PANTHER DNA POLYMERASE ALPHA CATALYTIC SUBUNIT 18 1559 - -
Aip05g00647 1561 CDD DNA_polB_alpha_exo 590 841 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00647 Aip-Chr5 8157780 8169473 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00647 9 1559 Core DNA Replication Machinery Family AT5G67100 59.530 0.0 1816
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00647 K02320 - gmx:100798779 2111.26
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00647 05 8157780 8169473 Aip05g00647 05 8157780 8169473 ECH