Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00645 ATGGGAGATCATATGTACAACTATGACAAGAATCTGTCATCGTCCTCTTCTTCACAGGACGAAATCTCTCTTTTCCTGCGTCAGATTCTGCTGCGTTCCTCACAACCTCACCAAGATTCACCACCACCGCCACAACAACAACAACAACTCCCTTCTTCTTCTTCCTCTTCTTGTTTCCCATCAACCTCACAGCTTCAAGATGGGAAGATCTCAGCTCTTGGTTCCACCCGTGCTGGTTTTCTCTCTGCCTCCTCCATGAAGGGGCACGGAGGTAATTCTGCACCAAATGTCTCTTCTTCTTCCGTAGGACTCAGTGCGAACGATACTGATGACTATGATTGCGAAAGTGAGGAGGGTGTTGAGGCCTTGGCAGAAGATGTTCCAGCAAAGCCTGTACCTTCTAGGAGTTCATCAAAGAGGAGCAGAGCAGCAGAAGTTCATAATTTGTCAGAAAAGAGAAGGAGGAGTAGGATCAATGAAAAGATGAAGGCCTTGCAAAATCTAATTCCAAATTCTAACAAGACTGATAAGGCTTCAATGCTGGATGAGGCTATTGAATATCTTAAACAGCTTCAGCTCCAAGTACAGATGCTATCGATGAGAAATGGATTGAGTTTGCACCCTATGAGCTTTCCCGAAGGATTGCAGCCTCTACAGTTCTCAAGAATGAGTATGGAGTTTAGTGAAGAAAACAGGGCCATCCCTGTAAACATGACAGAAAGTCTGCCTCTGCACCAAGGCAACCCCTTGCCCTACGCATCCCTACCTAACAAACCAACCATGCCAAATCAGCCATCAGTGACTTACCCTTCATATCTTAACAACTCAGAAGCGCCTTTTGGGCTGGAACCGCCAATCCTAGCACATATAAAACACCTTCAACCAGGAAGATTTTCTGAGGCGCATAGGGAAGACACACTGCAGCAGCAGCAATCAAATGCAAGCCATTCAGATACCGATCCATTAGGTGGTTCTCAAGCTGTAAAAGAGTTGGAGACAGGAACCATGCCCACAACATCACTCTCCTTTGACCTGCAAACATGTGAACCTAAGGACAACAACCCTTTGCAAATTTGCATTGCTGGAAGAGATCAATCATCATCAGTGATCATTAGAAATAGTTAA 1125 0.4524 MGDHMYNYDKNLSSSSSSQDEISLFLRQILLRSSQPHQDSPPPPQQQQQLPSSSSSSCFPSTSQLQDGKISALGSTRAGFLSASSMKGHGGNSAPNVSSSSVGLSANDTDDYDCESEEGVEALAEDVPAKPVPSRSSSKRSRAAEVHNLSEKRRRSRINEKMKALQNLIPNSNKTDKASMLDEAIEYLKQLQLQVQMLSMRNGLSLHPMSFPEGLQPLQFSRMSMEFSEENRAIPVNMTESLPLHQGNPLPYASLPNKPTMPNQPSVTYPSYLNNSEAPFGLEPPILAHIKHLQPGRFSEAHREDTLQQQQSNASHSDTDPLGGSQAVKELETGTMPTTSLSFDLQTCEPKDNNPLQICIAGRDQSSSVIIRNS 374
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00645 374 CDD bHLH_AtPIF_like 143 204 - -
Aip05g00645 374 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 142 191 IPR011598 GO:0046983
Aip05g00645 374 MobiDBLite consensus disorder prediction 140 156 - -
Aip05g00645 374 MobiDBLite consensus disorder prediction 29 70 - -
Aip05g00645 374 Gene3D - 137 201 IPR036638 GO:0046983
Aip05g00645 374 SMART finulus 148 197 IPR011598 GO:0046983
Aip05g00645 374 PANTHER TRANSCRIPTION FACTOR PIF1-RELATED 13 318 IPR031066 -
Aip05g00645 374 PANTHER TRANSCRIPTION FACTOR SPATULA 13 318 - -
Aip05g00645 374 MobiDBLite consensus disorder prediction 86 107 - -
Aip05g00645 374 MobiDBLite consensus disorder prediction 305 322 - -
Aip05g00645 374 MobiDBLite consensus disorder prediction 86 156 - -
Aip05g00645 374 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 139 202 IPR036638 GO:0046983
Aip05g00645 374 MobiDBLite consensus disorder prediction 49 70 - -
Aip05g00645 374 MobiDBLite consensus disorder prediction 298 325 - -
Aip05g00645 374 Pfam Helix-loop-helix DNA-binding domain 146 192 IPR011598 GO:0046983
Aip05g00645 374 Coils Coil 181 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00645 Aip-Chr5 8124418 8127838 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00645 17 328 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G36930 42.857 8.20e-50 169
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00645 HLH 4.3e-14 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00645 - - gmx:100793754 408.297
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00645 05 8124418 8127838 Aip05g00645 05 8124418 8127838 ECH