Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00640 ATGTTTTTCGAAAATGTTTCTTCTTCAGTTGCTGGCCCTAGGGATCATATAGAGGCTTCTATCATGCTCCCAATTAACAATAATAACGCTGGTGCTGAAATAATTTACATCAGTGACGAAGAACCAGATCTTGAATCATCATTGTCAGAGGTCAACATTAATTCTGCCCCTTCAATTTTATCAACAACGGAACAAACCAATCAACCTGCCTCAAATCTTTTAACATTACAAAGAAATTTGGGAATCAACACCGCCAACAACAACCACCAACAAGATGGTGTGTCACTCGATTTATCCTTACACCAGTTTGGCGGTGATGGTGGTGGCAGCTCTTCTACTATGGATGTCACCGATGGCGGCACTGGTGGTGGTGGTGGTGGAGGTGGAGATGGTCTCTTGATGAGGGTTTTCAACAATACTTCTACTAGGCGTATCATGCCTATGAAAAGAACTGCACCTGATTACGCTCACCGAGAGTTTACGGTGGGTGAGAGCTCAAGTGACGGTGGTGCTGCTGGTGGTTCTGTTGCTCAACCTATGGCAGCCCCCAAGCGCCGCCCCATCGCAAATGAAAATGAGGCTGTGCGCATTTCATCATCATCATCTAATACCTGCACTTGTACTCCTTCTCCCACTTGCCCTCTCCATGCTTCCACCAATAATAATATTACTTCATCTTCCAGGGAACAACGCCATGAAACTGCTAACAACAACAACAACCCCCAAAATGTTGTTCGTGTTCCTTCTAGTTTGTCGCCAATTTCTGAGATGCAACGAGCTCTTCAGTCTGGTAGCTTTCAAGTCCTTCAACCTACTACTACTACTCCTCCTCCTCCTCCTAACAACAACAACAACAACAACAACAACGCAACACATGGTATTCTGCAACTTGATGATGGTTCCTTTATTTACCCGCAACCTGTTTTTGATAGTAGCCACCACCACCAACTCCACCATGGCCATCAACGTTATTTCTCCTCTACTGACACTTCTCCATTCCGCCCAGCCTCAATCAATCACATGGAAAATCTTCCTCATCATCAGTACGCCGGTTCTTCGTCTTCGTCTCCTTCCCCTCTTCCTTGCAGCACTGTGATTAGGCCAAGGGCTATTCCCTCTGTGTCTCTCCCTCACCGAGTTGGAGGAAGTAATAGAGAATCTGACACCGGAAACAACTATTCTTCTGGAAGGGGAATAATCACTGTGACTCACAATCGTGGAAACTCATCATCATCATCAACACAGCTAGTGGAAAGCCTTGTACAAAACGCTGGTACCCCTTCTGCATTTCAGCACCTGTCGGACGCTGCTCTTGCATGGATTGGAAGGCTGAACTCTCACGACGCGACCTTGACGAGAATGTCATCATCTTCTACCACTGATAATACTCATCACAGGCCATTGCAAGCTTCTGCTATTGCTGAGGAGGCCTATAATTTGCCTACTTATTTTGCTGATGATTCAAGAAGGCTTAGAAGAGAGAGCCGCAGTGCCATTCAACATCTGCCTAATGGAGACTCCGTTCGACTCGAGGAGCTTTTAATCCTTGATTACTCCAACTTGCTTGCCAGCATTGAGGAGGAGGAGGATGCGAATTTGCCGCAATATGAGCCTCTGGCAGACGGGCAGCGAGTGACGAACCCTGATTTAAGACTGACGGAAACTGAGGTTGCAGCATGTATTGGGCGGGAAATTTTCCAAACTGTTGATGAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCAAGAGGACTATGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGGCAGTGGTTGCTCATCAAGAACAGATGCCCCGTTTGCAAGAAAATGGCTCTCACCATCATAGACTTGAGGAtgacgaggaacatgccatga 1911 0.46 MFFENVSSSVAGPRDHIEASIMLPINNNNAGAEIIYISDEEPDLESSLSEVNINSAPSILSTTEQTNQPASNLLTLQRNLGINTANNNHQQDGVSLDLSLHQFGGDGGGSSSTMDVTDGGTGGGGGGGGDGLLMRVFNNTSTRRIMPMKRTAPDYAHREFTVGESSSDGGAAGGSVAQPMAAPKRRPIANENEAVRISSSSSNTCTCTPSPTCPLHASTNNNITSSSREQRHETANNNNNPQNVVRVPSSLSPISEMQRALQSGSFQVLQPTTTTPPPPPNNNNNNNNNATHGILQLDDGSFIYPQPVFDSSHHHQLHHGHQRYFSSTDTSPFRPASINHMENLPHHQYAGSSSSSPSPLPCSTVIRPRAIPSVSLPHRVGGSNRESDTGNNYSSGRGIITVTHNRGNSSSSSTQLVESLVQNAGTPSAFQHLSDAALAWIGRLNSHDATLTRMSSSSTTDNTHHRPLQASAIAEEAYNLPTYFADDSRRLRRESRSAIQHLPNGDSVRLEELLILDYSNLLASIEEEEDANLPQYEPLADGQRVTNPDLRLTETEVAACIGREIFQTVDEQPQNIDACGICQEDYVHGEELGRLDCAHRYHLSCIRQWLLIKNRCPVCKKMALTIIDLRMTRNMP 636
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00640 636 MobiDBLite consensus disorder prediction 346 365 - -
Aip05g00640 636 MobiDBLite consensus disorder prediction 313 339 - -
Aip05g00640 636 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 212 624 IPR045191 GO:0061630
Aip05g00640 636 SMART ring_2 579 619 IPR001841 -
Aip05g00640 636 MobiDBLite consensus disorder prediction 373 394 - -
Aip05g00640 636 MobiDBLite consensus disorder prediction 323 337 - -
Aip05g00640 636 MobiDBLite consensus disorder prediction 346 362 - -
Aip05g00640 636 SUPERFAMILY RING/U-box 578 627 - -
Aip05g00640 636 MobiDBLite consensus disorder prediction 104 131 - -
Aip05g00640 636 ProSiteProfiles Zinc finger RING-type profile. 579 620 IPR001841 -
Aip05g00640 636 MobiDBLite consensus disorder prediction 163 182 - -
Aip05g00640 636 Pfam Ring finger domain 578 620 IPR001841 -
Aip05g00640 636 MobiDBLite consensus disorder prediction 269 293 - -
Aip05g00640 636 CDD RING-H2_TTC3 579 620 - -
Aip05g00640 636 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 212 624 - -
Aip05g00640 636 MobiDBLite consensus disorder prediction 380 394 - -
Aip05g00640 636 MobiDBLite consensus disorder prediction 218 245 - -
Aip05g00640 636 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 562 624 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00640 Aip-Chr5 7973579 7977621 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00640 494 624 C3H Transcription Factor Family AT2G15530 32.168 2.44e-20 93.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00640 - - aip:107640059 1045.03