Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00638 ATGACTACTACTTCATCAATTTCTGGCACTGATAATAATAATGCCGTACTATTTTTCGAAAATGTTTCTTCCTCATTTGCTGGCCCTATGGATCACAGAGAGGCTTCTATCATGCTCCCAATTAACAATAATAACGCTGGTGCTGAAATAATTTACATCAGTGACGAAGAACCAGATCTTGAATCATCATTGTCAGATGTCAACATTAATTCTGCCCCTTCAATTTTATCAACAACGGAACAAACCAATCAACCTACCTCAAATCTTTTAACATTACAAAGAAATTTGAGAATCAACACCGCCAACAACAACCACCAACAAGATGGTGTGTCACTCGATTTATCCTTACACCAGTTTGGCGGTGATGGTGGTGGCAGCTTTTCTACTATTGATGTCACCGATGGCGGCACTGGTGGTGGTGGTGGAGGTGGAGATGGTCTCTTGATGAGGGTTTTCAACAATACTTCGACTAGGCGTATCATGCCTATGAAAAGAACTGCACCTGATTACGCTCACCGAGAGTTTACGGTGGGTGAGAGCTCAAGTGACGGTGGTGCTGGTGGTGGTTCTGTTGCTCAACCTATGGCAGCCCCCAAGCGCCGCCCCATCGCAAATGAAAATGAGGCTGTGCGCATTTCATCATCATCATCTAATACCTGCACTTGTACTCCTTCTCCCACTTGCCCTCTCCATGCTTCCACCAATAATAATATTTCTTCATCTTCCAGGGAACAACGCCATGAAACTGCTAACAACAACAACAACCCCCAAAATGTTGTTCGTGTTCCTTCTAGTTTGTCGCCAATTTCTGAGATGCAACGAGCTCTTCAGTCTGGTAGCTTTCAAGTCCTTCAACCTACTACTACTACTCCTCCTCCTCCTCCTAACAACAACAACAACAACGCAACACTTGGTATTCTGGAACTTGACGATGATTCCTTTATTTACCCGCAACCTGTTTTTGATAGTAGCCACCACCACCAAGTCCACCATGGCCATCAACGTTATTTCTCCTCTGCTGACACTTCTCCATTCCGCCCAGCCTCAATCAATTACATGGAAAATCTTCCTCATCATCAGTACGCCGGTTCTTCGTCTTCGTCTCCTTCCCCTCATCCTTGGAGCACCGTGATTAGGCCAAGGGCTATTCCCTCTCTGTCTCTCCCTCACCGAGTTGGAGGAAGTAATAGAGAATCTGACACCGGAAACAACTATCCTTCTGGAAGGGGAATAATCACTGTGACTCACAATCGTGGAAACTCATCATCATCAACACAGCTAGTGGAAAGCCTTGTACAAAACGCTGGTACCCCTTCTGCATTTCAGCACCTGTCGGACGCTGCTCTTGCATGGATTGGAAGGCTGAACTCTCATGACGCGACCTTGACGAGAATGTCATCATCTTCTACCACTGATAATACTCATCACAGGCCATTGCGAGCTTCTGCTATTGCTGAGGAGGCCTATAATTTGCCTACTTATTTTGCTGATGATTCAAGAAGGCTTAGAAGAGAGAGCCGCAATGCCATTCAACATCTGCCTAGTGGAGACTCCGTTCGAGAACTCGAGGAGCTTTTAATCCTTGATTACTCCAACTTGCTTGCCAGCATTGAGGAGGAGGAGGATGCGAATTTGCCGCAATATGAGCCTCTGGCAGACGGGCAGCGAGTGACGAACCCTGATTTAAGACTGACGGAAACTGAGGTTGCAGCATGTATTGGGCAGGAAATTTTCCAAACTGTTGGTCAGCAGCCTCAGAACATTGATGCATGCGGCATATGTCAGAAGGACTATGTTCACGGTGAAGAGCTTGGGAGATTGGATTGTGCGCACAGATATCACCTTTCTTGCATCAGGCAGTGGTTGCTCATCAAGAACAGATGCCCCGTTTGCAAGAAAATGGCTCTCACCATCATAGACTTGGAGGAtgacgaggaacatactatgagtttatga 1956 0.455 MTTTSSISGTDNNNAVLFFENVSSSFAGPMDHREASIMLPINNNNAGAEIIYISDEEPDLESSLSDVNINSAPSILSTTEQTNQPTSNLLTLQRNLRINTANNNHQQDGVSLDLSLHQFGGDGGGSFSTIDVTDGGTGGGGGGGDGLLMRVFNNTSTRRIMPMKRTAPDYAHREFTVGESSSDGGAGGGSVAQPMAAPKRRPIANENEAVRISSSSSNTCTCTPSPTCPLHASTNNNISSSSREQRHETANNNNNPQNVVRVPSSLSPISEMQRALQSGSFQVLQPTTTTPPPPPNNNNNNATLGILELDDDSFIYPQPVFDSSHHHQVHHGHQRYFSSADTSPFRPASINYMENLPHHQYAGSSSSSPSPHPWSTVIRPRAIPSLSLPHRVGGSNRESDTGNNYPSGRGIITVTHNRGNSSSSTQLVESLVQNAGTPSAFQHLSDAALAWIGRLNSHDATLTRMSSSSTTDNTHHRPLRASAIAEEAYNLPTYFADDSRRLRRESRNAIQHLPSGDSVRELEELLILDYSNLLASIEEEEDANLPQYEPLADGQRVTNPDLRLTETEVAACIGQEIFQTVGQQPQNIDACGICQKDYVHGEELGRLDCAHRYHLSCIRQWLLIKNRCPVCKKMALTIIDLEDDEEHTMSL 651
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00638 651 SMART ring_2 591 631 IPR001841 -
Aip05g00638 651 MobiDBLite consensus disorder prediction 284 304 - -
Aip05g00638 651 PANTHER E3 UBIQUITIN-PROTEIN LIGASE HIP1-RELATED 216 636 - -
Aip05g00638 651 Pfam Ring finger domain 590 632 IPR001841 -
Aip05g00638 651 ProSiteProfiles Zinc finger RING-type profile. 591 632 IPR001841 -
Aip05g00638 651 MobiDBLite consensus disorder prediction 208 262 - -
Aip05g00638 651 MobiDBLite consensus disorder prediction 392 406 - -
Aip05g00638 651 SUPERFAMILY RING/U-box 590 641 - -
Aip05g00638 651 MobiDBLite consensus disorder prediction 177 262 - -
Aip05g00638 651 PANTHER E3 UBIQUITIN-PROTEIN LIGASE RNF165 216 636 IPR045191 GO:0061630
Aip05g00638 651 MobiDBLite consensus disorder prediction 386 406 - -
Aip05g00638 651 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 574 636 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00638 Aip-Chr5 7919843 7923473 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00638 505 636 C3H Transcription Factor Family AT2G15530 31.250 2.32e-18 87.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00638 - - aip:107640059 1212.59