Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00624 ATGTGGGATCTGAATGACTCTCCCGACCACAGAAAGGACTACGACTCTGAAGAAGCTTGTTCTTCACCCAAGACTACCACTACTTCCATGGACGATGACGTCAGAGGCAAGACCCTCCGATCTGCCTCCAATTCCAGCTCCTCTGCAGTCCTCCTAGAAGACGGATCCGAAGAAGACGAAGAACAAGCCAGCAGAACAACAACTACTCTCAACAACATCAACAGTAGCAGCAAGATATTCGGCTTCTCCGTCACCCCCATGGACGGTGACGACAACCCTCCCGTCACCCACCAGTTTTTCCCGGTGGAGGACTCCGGCTGTGGCGGAGGAGGAGGAGGAGGAGGAAGCTCGTCGTCGTCGTCGTTCCCTCGAGCTCACTGGGTTGGCGTGAAGTTCTGCCAATCGGAAGCAGTAGTTGGGGGCGGTGGGAAATCGGCGGCGGTGGAAGTCTCTCAGCCTATGAAGAAGAGCCGGAGAGGACCAAGGTCTCGGAGCTCACAGTATAGAGGAGTCACCTTTTACCGAAGAACGGGTCGTTGGGAATCTCATATTTGGTCCGTCACCACCATATATATTTCTCTCTCCTCACCTTTCTTAATTCATTTTTCTGCTTTCGACAGTGCTTATGATAGAGCGGCAATTAAGTTCCGCGGAGTGGAGGCTGACATTAACTTCAACATAGAAGACTACGAAGAAGACTTGAAGCAGATGACGAATTTGACAAAGGAAGAATTTGTGCACGTGCTTCGGCGACAAAGCACTGGGTTTCCAAGAGGAAGTTCCAAATATAGAGGTGTTACCTTGCACAAGTGTGGAAGATGGGAGGCTCGTATGGGCCAATTTCTAGGCAAAAAGTATGCCCCCTCTTCCCCCCTTCTCCCCTTCAATTTCATCTATTTTGCTAAGCTACCCTCAATTTTATTTTATTTTATTAGGTACGTTTATCTGGGCCTCTTTGATACTGAGATTGAAGCTGCCAGGGCTTATGACAAAGCAGCAATCAAATGCAATGGCAAAGAGGCCGTCACCAATTTTGATCCCAGCATCTATGAAAACGAGCTTAATTCTGAATCGTCAGGAGGCAACGGTGCAGCAGATCACAATCTGGATCTAAGTTTGGGCAATCCAAGTTCAAAGCATAGCAGTAATCAAGCACTGGGGACAACGGATTGGCACAATGAGGGAGCCAACAATAACAAGCATAAGCTGGTGAATATACTACCAAAACCATGTAGTAGTAGAAGCAACATAGAGCAGCATGGACAGCGTGAGAGTGAAGCCATGGCCCCAATGCCGCGGCTGCATCAAACTCAATTTCCGCTCTCAAACGAAATGCATAGATACGGTCCTTATTATAGATCCCATCATGCAGCTGGAGACACTCCGCATCAAATGCTACACGCGTTTCCACCAAATTTTCATTTTCCAAGCAGCAGCAAAGGAGGCCGAATTGGAAGCGAGCTTTCGCTGTCATCATCAATGAGCGATCAAGAACAACATGTACAGTGGCAAGCAGGAGCTGGAGGAGGGCCTCCACATTTGTTAGCAACTGCTGCTGCAGCATCATCAGGATTCCCGCCGCAGATTTTAACACCCTCCCAAGGGATGGTGATGAATAGTCTCAATCAACGGTGTCCTTTGAATCAGTTCTTATGA 1656 0.4855 MWDLNDSPDHRKDYDSEEACSSPKTTTTSMDDDVRGKTLRSASNSSSSAVLLEDGSEEDEEQASRTTTTLNNINSSSKIFGFSVTPMDGDDNPPVTHQFFPVEDSGCGGGGGGGGSSSSSSFPRAHWVGVKFCQSEAVVGGGGKSAAVEVSQPMKKSRRGPRSRSSQYRGVTFYRRTGRWESHIWSVTTIYISLSSPFLIHFSAFDSAYDRAAIKFRGVEADINFNIEDYEEDLKQMTNLTKEEFVHVLRRQSTGFPRGSSKYRGVTLHKCGRWEARMGQFLGKKYAPSSPLLPFNFIYFAKLPSILFYFIRYVYLGLFDTEIEAARAYDKAAIKCNGKEAVTNFDPSIYENELNSESSGGNGAADHNLDLSLGNPSSKHSSNQALGTTDWHNEGANNNKHKLVNILPKPCSSRSNIEQHGQRESEAMAPMPRLHQTQFPLSNEMHRYGPYYRSHHAAGDTPHQMLHAFPPNFHFPSSSKGGRIGSELSLSSSMSDQEQHVQWQAGAGGGPPHLLATAAAASSGFPPQILTPSQGMVMNSLNQRCPLNQFL 551
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00624 551 Gene3D AP2/ERF domain 166 228 IPR036955 GO:0003700|GO:0006355
Aip05g00624 551 Gene3D AP2/ERF domain 261 347 IPR036955 GO:0003700|GO:0006355
Aip05g00624 551 MobiDBLite consensus disorder prediction 1 70 - -
Aip05g00624 551 ProSiteProfiles AP2/ERF domain profile. 167 226 IPR001471 GO:0003700|GO:0006355
Aip05g00624 551 PRINTS Ethylene responsive element binding protein signature 328 348 IPR001471 GO:0003700|GO:0006355
Aip05g00624 551 PRINTS Ethylene responsive element binding protein signature 263 274 IPR001471 GO:0003700|GO:0006355
Aip05g00624 551 MobiDBLite consensus disorder prediction 1 19 - -
Aip05g00624 551 MobiDBLite consensus disorder prediction 482 499 - -
Aip05g00624 551 CDD AP2 167 227 IPR001471 GO:0003700|GO:0006355
Aip05g00624 551 MobiDBLite consensus disorder prediction 353 389 - -
Aip05g00624 551 MobiDBLite consensus disorder prediction 477 499 - -
Aip05g00624 551 CDD AP2 261 348 IPR001471 GO:0003700|GO:0006355
Aip05g00624 551 ProSiteProfiles AP2/ERF domain profile. 262 346 IPR001471 GO:0003700|GO:0006355
Aip05g00624 551 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1 534 - -
Aip05g00624 551 PANTHER AP2 DOMAIN TRANSCRIPTION FACTOR 1 534 - -
Aip05g00624 551 SMART rav1_2 262 352 IPR001471 GO:0003700|GO:0006355
Aip05g00624 551 SMART rav1_2 167 232 IPR001471 GO:0003700|GO:0006355
Aip05g00624 551 MobiDBLite consensus disorder prediction 144 167 - -
Aip05g00624 551 SUPERFAMILY DNA-binding domain 313 348 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00624 Aip-Chr5 7675745 7678896 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00624 1 382 AP2-EREBP Transcription Factor Family AT4G36920 57.286 5.54e-119 356
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g00624 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00624 K09284 - gmx:100801975 544.658
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00624 05 7675745 7678896 Aip05g00624 05 7675745 7678896 ECH
Aip05g00624 05 7675745 7678896 Aip01g00983 01 19219352 19221985 PCT