Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00604 ATGCCTCGGGGGGTGGGGGGAACCGGTTCCGTACAGCTGTATCCCAAATCCCAAGCCAACCGCTTCCCTGGAAGGCATCGGGCCTTCACCCCCGAAGAGGACGATACCATAATCAGAGCTCACGCTCGGTTCGGCAACAAGTGGGCCACTATAGCCCGACTCCTCTCCGGCAGAACCGACAACGCCATTAAGAACCACTGGAACTCCACCCTCAAACGCAAGTGCGCCTCCATGGGCCCCATCGACGACCCTCACTTTGCTCAGCCACTCAAACGCTCCGTCAGCGCCGGCGCCGCCGTACCCGTATCAACGGGCCTCTACATGAACCCTCCCACACCCGGAAGCCCCTCCGGATCCGATGTGAGCGAGTCAAGCGTCCCCGCTGCCTCCACATCGCACGTTTTCCGACCTGTGCCTAGAGCCGGCGGTGTCGTACCGCCGGTAGAAACGACGTCGTCTTCCTATGACCCTCCCACTTCATTGTCCCTTTCCCTCCCCGGGGTTGACTCTAATTCGGAAGTCTCGAATCGTGGCAACGAACCGTCGCCTCACTCGGCGCCGCCGTTGACTGCCATACCTCTGTTGCCAATAATGTCGGCTGCTGTATCCGCGACGGTGGCGGCCGTTCCAGCGGTAACTGCCACAGCTCCAGGTACTGCTCCGTTGGCTGCACAGCCGTTACAGCAAATTCGCGATCCATCGGCTGTGGCTGCGGTGCCGAAGCAGAATAATGGAGCGGCTCCGTTCAACTTTAGTGCTGAGCTTTTGGCGGTGATGCAAGATATGATAAGGAAGGAAGTGAGGAGTTATATGGCTGGATTAGAGCAGCAAAGTAACAATAATGGGATGTGTTTTCAGGCTGCTGATGGTGGCTTTAGGAACGCTTCCGTTAAGCGAATTGGGATTAGCAGGATCGATTCGTAA 924 0.5768 MPRGVGGTGSVQLYPKSQANRFPGRHRAFTPEEDDTIIRAHARFGNKWATIARLLSGRTDNAIKNHWNSTLKRKCASMGPIDDPHFAQPLKRSVSAGAAVPVSTGLYMNPPTPGSPSGSDVSESSVPAASTSHVFRPVPRAGGVVPPVETTSSSYDPPTSLSLSLPGVDSNSEVSNRGNEPSPHSAPPLTAIPLLPIMSAAVSATVAAVPAVTATAPGTAPLAAQPLQQIRDPSAVAAVPKQNNGAAPFNFSAELLAVMQDMIRKEVRSYMAGLEQQSNNNGMCFQAADGGFRNASVKRIGISRIDS 307
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00604 307 ProSiteProfiles Myb-like domain profile. 29 71 IPR001005 -
Aip05g00604 307 Pfam Myb-like DNA-binding domain 28 70 IPR001005 -
Aip05g00604 307 PANTHER TRANSCRIPTION FACTOR MYB44-LIKE 26 273 - -
Aip05g00604 307 MobiDBLite consensus disorder prediction 1 28 - -
Aip05g00604 307 CDD SANT 28 71 IPR001005 -
Aip05g00604 307 PANTHER MYB PROTEIN-RELATED 26 273 - -
Aip05g00604 307 MobiDBLite consensus disorder prediction 147 183 - -
Aip05g00604 307 SMART sant 25 73 IPR001005 -
Aip05g00604 307 Gene3D - 28 91 - -
Aip05g00604 307 MobiDBLite consensus disorder prediction 105 187 - -
Aip05g00604 307 SUPERFAMILY Homeodomain-like 25 75 IPR009057 -
Aip05g00604 307 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 75 IPR017930 -
Aip05g00604 307 MobiDBLite consensus disorder prediction 108 131 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00604 Aip-Chr5 7403598 7405576 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00604 26 306 MYB Transcription Factor Family AT4G37260 41.967 4.44e-56 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip05g00604 Myb_DNA-binding 2.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00604 K09422 - gmx:780556 296.204
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00604 05 7403598 7405576 Aip01g01017 01 20991417 20992367 ECH
Aip06g03738 06 134982571 134991782 Aip05g00604 05 7403598 7405576 ECH
Aip05g00604 05 7403598 7405576 Aip05g00604 05 7403598 7405576 ECH
Aip05g00604 05 7403598 7405576 Aip10g01952 10 69520731 69522001 PCT
Aip01g01017 01 20991417 20992367 Aip05g00604 05 7403598 7405576 PCT