Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00588 ATGTTGGAGCTCTGTCGAAAACCGTTGATGTGCTTCTTCTCATGTGGACTAGGAGGAGGCAACTATGACGATGAGCTTCTATGGGACTTAGAGTTGAAGCCACACACCGCAGGTGAATATTCAATTGCTGTTGTTCAAGCCAATTCTTCTTTGGAAGACCAAGCACAGGTGTTTACTTCTCCCTTTGCAACTCTTGTTGGTGTTTATGATGGCCATGGTGGACCTGAAGCTTCTCGTTTCGTCACCAACCATCTCTTCTCCTTCATTCACATGTTCTCTGCAGAGGATGGTGGGTTATCGGAGCAAGTGATAAAGAAAGCTTTCAGTGCAACTGAAGAGGAGTTCTTGCGTATGGTGAAGCAATCATGGATTTCGCAGCCACACATTGCTTCGGTGGGATCGTGTTGTATTCTTGGAGCAATTTCAAACGATGTTCTCTATGTTGCTAACCTTGGAGACTCGAGGGCAGTTCTCGGTCGCAAAGCATTCGGAGGAAACGAGGTTGGTTGCGGTCATAATGTGGTGGCAGAGCGTTTGTCCACGGATCATAATGTTGGAGTGGAGGAGGTGAGAAAGGAGGTTGAGGCTCTTCACCCTGATGATGATTATGTTGTGGTTAATGCTAATGGAGTTTGGAGAATCAAGGGGATTATTCAGGTCTCAAGATCAATTGGAGATGTTTATCTAAAGAAGCCAGAGTTCGACAACAACTCTATAATGTTCCAGCAATGTGTGTCCCCGGTACCTTTAAAGAGAGCCGTGATGACGGCGGAGCCATCAATATTAGCTCGGAAGTTGAAGGCGGAGGATTTGTTTCTGATCTTCGCATCGGACGGACTTTGGGAGCAATTAACGGACAAAGAAGCCGTTGAAATCGTGTCTAGAAGTCCAAGAAAAGGGATAGCAAAAAGATTGGTGAGAGCTGCACTAGAAGCTGTTGCAAAGAAAAAAGAAATGAGATATGCGGATTTAAAGAAAATTGAGAAAGGTGTAAGGCGCCATTTCCATGATGATATTACAGTGATTGTTATATACCTTGATCACTCACAAAATTCTGTGAATGGTAGTAGGCCAAGACATCAAGGAATCTATGATTCTGTTAATGCTCCTGTAGATATCTACTCTATTAATGCAGATAGGTAA 1143 0.4392 MLELCRKPLMCFFSCGLGGGNYDDELLWDLELKPHTAGEYSIAVVQANSSLEDQAQVFTSPFATLVGVYDGHGGPEASRFVTNHLFSFIHMFSAEDGGLSEQVIKKAFSATEEEFLRMVKQSWISQPHIASVGSCCILGAISNDVLYVANLGDSRAVLGRKAFGGNEVGCGHNVVAERLSTDHNVGVEEVRKEVEALHPDDDYVVVNANGVWRIKGIIQVSRSIGDVYLKKPEFDNNSIMFQQCVSPVPLKRAVMTAEPSILARKLKAEDLFLIFASDGLWEQLTDKEAVEIVSRSPRKGIAKRLVRAALEAVAKKKEMRYADLKKIEKGVRRHFHDDITVIVIYLDHSQNSVNGSRPRHQGIYDSVNAPVDIYSINADR 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00588 380 ProSiteProfiles PPM-type phosphatase domain profile. 39 346 IPR001932 -
Aip05g00588 380 SUPERFAMILY PP2C-like 45 348 IPR036457 -
Aip05g00588 380 CDD PP2Cc 46 346 IPR001932 -
Aip05g00588 380 Pfam Protein phosphatase 2C 65 312 IPR001932 -
Aip05g00588 380 Gene3D - 30 354 IPR036457 -
Aip05g00588 380 ProSitePatterns PPM-type phosphatase domain signature. 65 73 IPR000222 GO:0043169
Aip05g00588 380 SMART PP2C_4 31 344 IPR001932 -
Aip05g00588 380 PANTHER ALPHABET, ISOFORM E-RELATED 3 379 - -
Aip05g00588 380 PANTHER PROTEIN PHOSPHATASE 2C 63-RELATED 3 379 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00588 Aip-Chr5 7104832 7107590 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00588 24 355 PP2C-type Phosphatase Gene Family AT3G51370 53.959 9.48e-131 378
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00588 - K01102 gmx:100802394 566.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip09g03784 09 144612021 144614345 Aip05g00588 05 7104832 7107590 ECH
Aip05g00588 05 7104832 7107590 Aip05g00588 05 7104832 7107590 ECH
Aip05g00588 05 7104832 7107590 Aip09g03784 09 144612021 144614345 PCT