Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00579 ATGGAACTCTCTTCTTCCTCCTCCTTACTCTCCCCGAAACCATGTTCACCCGCCCTTTCCAGCTACTCCTTCTCCTCTTCATTCTCCCCCTTCCCAATAAAAAACCACAATTCCAGAAACCGGAATCCACGGAGCTTTCGCATTCTCGCCGTAGCCTTGGAACCGCCGCAGCAGGAACTCCCCAACACCAGCCCCCATCCTCTCCTCAAGGAGCTCGCCGAACGCAAGAAGATAACTTCTCCTAAGAAGAAAGGTCCCACAAGAAGGTTCCTCTTGAAGCCCCCATTAGACGACAACAAACTCGCTGACAGGTTCCTCAAGAGCCCACAAATGTCCCTAAAATCGTTCCCCTTGTTGAGTTCGTGCTTGCCTTCTTCGCGGCTCAACAGTGCCGACAAGGCATGGATTGAGGACTACTTGCTGGAAGCCAAGCAGGCTCTGGGGTACCCTCTTGAGCCCTCCGAGGCTCTGGGGGACGACAACCCTGCCAAACAGTTCGATGATTTGTTGTATCTGGCATTTCAGCATCCGTCCTGCGAGAGGACCAAGGCGCGCCACGTGAGGTCAGGGCATTCTAGGCTGTTCTTTATTGGACAGTACGTGCTGGAATTGGTCATGGCAGAGTTCTGCTTGCAGAGGTATCCTATGGAGTCGCCGGGTCCTATGAGGGAGAGAGTGTTTGGTTTGATTGGGAAGAGGAGCTTGCCTCGGTGGATCAAGGCTGCAAGCTTGCAGAATTTGGTTTTTCCCTATGATGATATTGATCGGATGTTGAGGAAGGATAGGGAGGGACCTGTAAAGTCAGTATTTGGAGCTTTGTTTGGTGCAATCTATCTTTGTCATGGTATTCCAGAAGTATATCGTGTTCTTTTTGAAGTATTTGGAATGGATCCAGATGCTGAAGATTGCCAACCCAAACTGCGCAGACAACTTGAAGACATAGATCATGTGTCTAATGAACTTGAAGGCAAGATAAGCTGGCAGGATATTGTCTCATATAGGCCTCCTGCAGATGCTCTGGTTGCACATCCAAGGCTGTTCCGAGCTTGTGTTCCTCCAGGCATGCATAGATTCAGAGGAAATTTATGGGATTATGATAGCAGACCCAAGGTTATGAAGACACTTGGATATCCGTTAGAAATGACTGATAGTATTCCAGAGATTACAGAAGCCAGGAACATAGAGCTTGGACTTGGATTGCAGCTCTGTTTCATGCATCCATCAAAGTACAAATTTGAGCATCCTCGATTTTGCTTTGAGAGATTAGAATACATCGGCCAAAAGATACAGGATTTGGTGATGGCTGAAAGATTGTTGATGAAGCATTTAGACGCTCCAGGATTATGGCTTCAAGAGAGGCACCGACGCCTTCTTCTGAACAAGTATTGTGGTAGATATTTGAGGGAGAAACATCTTCATGGTTTTGCTATATATGCTGACGATAAACAAGACTCTTTCGAGCGCAACCGGAGGAACAGAAACCCTGCCACAGCATCTATTCAACAAGCGATTCACGGGCTTTCATATCTTGTTTATGGGAAACGCGATGTGAGACGTCTAATGTTTGAGGTTTTTGACTTTGAGCAGCAGCCAGCAGGTAACTCCGACCTCAGCCCTCTTGGAAATGATTCGGAGCGCCCCGCTATGTCGAAGGCGCGCGTCTACACTGATATAAATGTTCTTCGCCCCAAAGAGTACTGGGATTATGAGTCCCTCAACGTTCAATGGGGTGATCAAGATGATTATGAGGTTGTGCGGAAAGTGGGAAGGGGGAAATATAGCGAGGTATTTGAAGGCATAAATGTTAATAGCAATGAGCGCTGTATAATCAAGATTCTCAAGCCTGTCAAGAAAAAAAAGATTAAAAGGGAGATTAAAATACTTCAGAACCTCTGTGGAGGCCCTAATATTGTCAAACTTCTTGATATTGTCAGAGATCAACATTCGAAAACTCCTAGCTTGATATTTGAGTATGTCAACAGTACAGATTTTAAAGTTTTGTATCCAACCTTGACTGATTATGACATACGCTATTACATATATGAGCTCCTCAAGGCATTGGATTACTGCCACTCTCAAGGCATAATGCATAGAGATGTCAAGCCTCATAATGTTATGATTGATCATGAATTAAGAAAACTTCGCTTAATAGATTGGGGTCTTGCTGAATTTTATCATCCTGGAAAGGAATATAATGTTCGTGTGGCATCAAGATACTTCAAGGGGCCTGAACTTCTAGTTGATTTGCAAGACTATGACTATTCATTAGATATGTGGAGCCTTGGCTGCATGTTTGCTGGAATGATATTTCGCAAGGAACCTTTCTTCTATGGTCATGACAACCATGATCAGCTTGTCAAAATAGCTAAGGTGCTTGGGACTGATGAACTGAACGCGTATCTGAATAAGTATCATCTAGAGCTTGATCCTCAACTTGATGCTCTTGTTGGAAGACACAGTCGCAAACCATGGTCTAAGTTTATCAATGCAGATAATCAGCATCTTGTGTCTCCAGAGGCAATTGATTTTCTTGATAAGCTCCTTCGGTATGATCACCAAGACAGGCTAACAGCCAGAGAAGCAATGGCACATCCATATTTCTCTCAAGTTAGGGCTGCAGAAAGTAGCAGAATGAGGACACAAAGCTCAATTATTGACTCATCTCCTCGCCTTGGCACGGTTTTTGTTTTCGGGGTGGGGGTGGATGGGATATCGTGGCCTGCATTTGCTATTGCTCGTTTGAACATTTACCCCATCCAGCATAGCCATCAACGTCAACACTCAACAGTTTCCAGCATCGATTTCAAGAGGTAG 2814 0.4513 MELSSSSSLLSPKPCSPALSSYSFSSSFSPFPIKNHNSRNRNPRSFRILAVALEPPQQELPNTSPHPLLKELAERKKITSPKKKGPTRRFLLKPPLDDNKLADRFLKSPQMSLKSFPLLSSCLPSSRLNSADKAWIEDYLLEAKQALGYPLEPSEALGDDNPAKQFDDLLYLAFQHPSCERTKARHVRSGHSRLFFIGQYVLELVMAEFCLQRYPMESPGPMRERVFGLIGKRSLPRWIKAASLQNLVFPYDDIDRMLRKDREGPVKSVFGALFGAIYLCHGIPEVYRVLFEVFGMDPDAEDCQPKLRRQLEDIDHVSNELEGKISWQDIVSYRPPADALVAHPRLFRACVPPGMHRFRGNLWDYDSRPKVMKTLGYPLEMTDSIPEITEARNIELGLGLQLCFMHPSKYKFEHPRFCFERLEYIGQKIQDLVMAERLLMKHLDAPGLWLQERHRRLLLNKYCGRYLREKHLHGFAIYADDKQDSFERNRRNRNPATASIQQAIHGLSYLVYGKRDVRRLMFEVFDFEQQPAGNSDLSPLGNDSERPAMSKARVYTDINVLRPKEYWDYESLNVQWGDQDDYEVVRKVGRGKYSEVFEGINVNSNERCIIKILKPVKKKKIKREIKILQNLCGGPNIVKLLDIVRDQHSKTPSLIFEYVNSTDFKVLYPTLTDYDIRYYIYELLKALDYCHSQGIMHRDVKPHNVMIDHELRKLRLIDWGLAEFYHPGKEYNVRVASRYFKGPELLVDLQDYDYSLDMWSLGCMFAGMIFRKEPFFYGHDNHDQLVKIAKVLGTDELNAYLNKYHLELDPQLDALVGRHSRKPWSKFINADNQHLVSPEAIDFLDKLLRYDHQDRLTAREAMAHPYFSQVRAAESSRMRTQSSIIDSSPRLGTVFVFGVGVDGISWPAFAIARLNIYPIQHSHQRQHSTVSSIDFKR 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00579 937 CDD RIBOc 400 525 IPR000999 GO:0004525|GO:0006396
Aip05g00579 937 ProSiteProfiles Ribonuclease III family domain profile. 168 282 IPR000999 GO:0004525|GO:0006396
Aip05g00579 937 SMART riboneu5 168 305 IPR000999 GO:0004525|GO:0006396
Aip05g00579 937 SUPERFAMILY Protein kinase-like (PK-like) 554 871 IPR011009 -
Aip05g00579 937 SUPERFAMILY RNase III domain-like 167 295 IPR036389 GO:0004525|GO:0006396
Aip05g00579 937 PANTHER RIBONUCLEASE III 11 532 IPR011907 GO:0003723|GO:0004525|GO:0006364
Aip05g00579 937 Pfam Protein kinase domain 582 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00579 937 ProSiteProfiles Protein kinase domain profile. 582 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00579 937 MobiDBLite consensus disorder prediction 74 93 - -
Aip05g00579 937 ProSitePatterns Protein kinases ATP-binding region signature. 588 611 IPR017441 GO:0005524
Aip05g00579 937 Gene3D Ribonuclease III domain 165 296 IPR036389 GO:0004525|GO:0006396
Aip05g00579 937 Gene3D Ribonuclease III domain 392 528 IPR036389 GO:0004525|GO:0006396
Aip05g00579 937 Gene3D Phosphorylase Kinase; domain 1 582 658 - -
Aip05g00579 937 ProSitePatterns Serine/Threonine protein kinases active-site signature. 695 707 IPR008271 GO:0004672|GO:0006468
Aip05g00579 937 Gene3D Transferase(Phosphotransferase) domain 1 659 867 - -
Aip05g00579 937 SMART serkin_6 582 867 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00579 937 PANTHER RIBONUCLEASE III DOMAIN-CONTAINING PROTEIN RNC1, CHLOROPLASTIC 11 532 - -
Aip05g00579 937 SUPERFAMILY RNase III domain-like 400 526 IPR036389 GO:0004525|GO:0006396
Aip05g00579 937 CDD RIBOc 168 302 IPR000999 GO:0004525|GO:0006396
Aip05g00579 937 CDD STKc_CK2_alpha 563 867 IPR045216 GO:0004674|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00579 Aip-Chr5 7058545 7067062 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00579 580 867 Core Cell Cycle Gene Families AT1G76540 29.450 4.40e-40 149
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CK2 Aip05g00579 Pkinase 1e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00579 - - lja:Lj2g3v1963040.1 856.284
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00579 05 7058545 7067062 Aip05g00579 05 7058545 7067062 ECH
Aip05g00579 05 7058545 7067062 Aip01g01074 01 23356032 23360612 PCT