Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00576 ATGGAACAGTTACTTGTTCACTGCGCCAACGCTATTGAAACCAACGACGTAACCCTCGCTCAGCAGATTCTCTGGGTTCTAAACAACATAGCTCCACCTGACGGCGATTCCAATCAGCGACTCGCCGGAAGCTTCCTCAGAGCCCTAACCGCACGCGCCGCGAATACTGGAAGCTGCAAGATGCTCGCCGCTGTAGCTGACGCCGCTGCTAACCGTAACAGCCTCGCCATCGAAACGCACAGATTCTCTGTCATCGAGCTGGCAAACTTCGTTGACCTCACTCCATGGCACAGGTTCGGGTTCACCGCCGCCAACGCCGCCATTTTAGAAGCCACGGAAGGGTTCTCGGTGATCCACATCGTGGATTTGAGCTTGACGCACTGCATGCAGATCCCGACGCTGATCGACGCCATCGCTGGCCGCCACGAGGTGCCTCCTGTAATCAAGCTCACGGTTCCCGGTGCCGCCTTCAGAGAAGGTAACATCAATATCCCTCCATTACTCGATCTTTCTTACGAGGAATTAGGCGCGAAGTTGGTCAACTTCGCTAGGTCGAAGAACGTGGTCATGGAATTCAGCGTTGTTTCTTCGAGTTACGCTGATGGATTCGCCTCTTTGATCGAACACCTGAGAGTGCAACATATAGTTTCCGTTGCAGAAGGTCATCGTCCAAACGAAGCTTTGGTTATTAACTGTCACATGATGCTTCATTACATTCCCGATGAAACTGCACTAGTTCATCATCATGAAACAGATTCGAATTTAAATCCTTTTATTGTTCATGATTACTCTTCTTCTTCGTCATCTCCTTCATCTTCATCGTCATCATTGCGGTCAATGTTTCTTAAGGCGGTTCGGAGTTTGGAACCTACAATTATGGTTTTGGTAGATGAGGACGTGGATTTGATATCAAATAACTTGGTGTGTAGGCTTAGGTCTGCGTTCAATTATCTGTGGATACCGTACGACACGGTGGACACGTTCCTTCCTCGAGGCAGCAAGCAAAGGCAGTGGTATGAAGCTGACATATGTTGGAAGATTGAGAACGTGATAGCGCATGAAGGGGCTGAGAGGGTGGAGAGGGTTGAGCCCAAGAGCAAGTGGGAGCAAAGGATGAGGAATGCGAGCTTCCATGGGATTGGATTCAGCGACGAATCGATTTCGGAGGTGAAGGGGATGCTGGATGAACATGCTGCTGGTTGGGGTGTTAAGAAGGAAGATGACAATCTTCTTCTCACTTGGAAAGGCCATAATGTTATCTTTGCTTCAGCTTGGTTACCTGCTTAG 1287 0.4942 MEQLLVHCANAIETNDVTLAQQILWVLNNIAPPDGDSNQRLAGSFLRALTARAANTGSCKMLAAVADAAANRNSLAIETHRFSVIELANFVDLTPWHRFGFTAANAAILEATEGFSVIHIVDLSLTHCMQIPTLIDAIAGRHEVPPVIKLTVPGAAFREGNINIPPLLDLSYEELGAKLVNFARSKNVVMEFSVVSSSYADGFASLIEHLRVQHIVSVAEGHRPNEALVINCHMMLHYIPDETALVHHHETDSNLNPFIVHDYSSSSSSPSSSSSSLRSMFLKAVRSLEPTIMVLVDEDVDLISNNLVCRLRSAFNYLWIPYDTVDTFLPRGSKQRQWYEADICWKIENVIAHEGAERVERVEPKSKWEQRMRNASFHGIGFSDESISEVKGMLDEHAAGWGVKKEDDNLLLTWKGHNVIFASAWLPA 428
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00576 428 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 426 IPR005202 -
Aip05g00576 428 Pfam GRAS domain family 1 425 IPR005202 -
Aip05g00576 428 ProSiteProfiles GRAS family profile. 1 426 IPR005202 -
Aip05g00576 428 PANTHER SCARECROW-LIKE PROTEIN 32 1 426 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00576 Aip-Chr5 6962282 6963568 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00576 1 427 GRAS Transcription Factor Family AT3G49950 56.279 3.71e-168 476
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip05g00576 GRAS 8e-90 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00576 - - adu:107487668 827.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00576 05 6962282 6963568 Aip05g00576 05 6962282 6963568 ECH