Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00566 ATGTCGAGCTCCTCTGTTTCGTCTCTTCCTCCGGATCTGCTCACCATCTCATTCTACGTGTGCATTGTTCGAATCTGCTGTAGATGCATGAGCGTCCTGCTTCTGTCGCCTCCAGTTTATGTCGCCGCCAGCCTTTCACCGTCACCATCCATCACTGACCCTAGATTTGAGGCTTTGAATTTGAAGGTTAATGAGGAGCCTGCTCCATTACCTAAGAAGACTATTATAGTGAGTGTAATTGGGCTGCCTAATGTTGGCAAGAGTAGTCTTATTAATAGCTTGAAAAGAGCTCATGTTGTTAATGTTGGTGCTACTCCTGGATTAACAAGATCAATGCAAGAGGTTCAATTGGACAAAAACATTAAGTTGCTAGACTGTCCTGGTGTTGTCATGCTTAAATCACTAGAAAATGATGCTTCTGTAGCTCTACTGAATTGCAAGAGAATTGAGAAGTTAGATGATCCAATTAGCCTAGATATTGAGAAGTATGAGGTGGAAAGTGAAGAATTCAGTAGTGCTATCTTTAGATTTTTACACCGCCACCAAAAGCTTGAAACTTCAACACAAGATTGGCAGATAAACGGATGTCTAGGGTGGACCACAATTGTTGTAATTCTCTCCAAGATGACAACAAATTCACTCCAGCACCGCCACTGCCGCCACCACCACCACCTCCTCTGCCCCGTTCAACGGCAACTAGTTGTTGTCCTTGCAGGCGCCTTGTGGCGAATTATAATTCAGCAATTTAAAGCAGATGTTAGGATTAATACTGGTAACGGCGGCATTGTTTACGCTCATTATAACATAGTTGCAGTGGCATCCCCCGTATTAAGAGACTTGCTGAAGCAAGGAAATTTTTGTCGGAGGTGGAGATCAATCACAATCACAGGGGTACCACATGATGCTGTTCGGGTTTTCTTTCGATATTTGTACACTTCGTGTTATGAGAAGGAAGAGATGGAAGCATATGTACTACATTTGTTAGTGCTGTCACATGTATTCGTGGTCCCTCATTTGAAGCGGGAATGTGAGCAGAAACTAGAATCGAGTTTCCTCACGATAGACAATGTAATTGATGTATTTCAGATTTCATTACTGTGTGATGCTCCACGGCTTAGCCTCATCTGTCACCGTATGATACTTAGCAACTTCAAAGCAGTTTCAGAGTCTGAAGGATGGAAAGCGATGAAGGAGAGCCATCCAGTTTTAGAAAAGGAAGTTTTGGAGTCCATGATCGAGGAAGAAAATAATAAAAAGGAGAGGACCAGAAAGATCAATGAGAGGAAGATATACATGCAACTGTATGAGGCGATGGAAGCTCTTGTTCACATATGCAGAGATGGCTGCCGAACTATTGGCCCTTGTGATAAAGACTTCAAAGCAAATCAGCCATGTAAATATGCAGCATGTAAGGGGCTAGAATTGCTCGTGCGACATTTTGCTGCATGCAAACTTAGAGTCCCTGGAGGTTGTGGTCATTGCAAGAGGATGTGGCAACTATTAGAGCTGCATTCCCGAATATGTTCTGATCCCGATGGTTGTAGAGTTCCCTTGTGCAGGAACTTTAAGCAGCGGATATCGAAACAAAGCAAGAAAGAGGAAATCAGGTGGAAAATATTGGTTAAAAAGATCTTGAGAACAAGAGGTATTGGAATAGCACCATGCTTTCAGCAGCAATAA 1680 0.4286 MSSSSVSSLPPDLLTISFYVCIVRICCRCMSVLLLSPPVYVAASLSPSPSITDPRFEALNLKVNEEPAPLPKKTIIVSVIGLPNVGKSSLINSLKRAHVVNVGATPGLTRSMQEVQLDKNIKLLDCPGVVMLKSLENDASVALLNCKRIEKLDDPISLDIEKYEVESEEFSSAIFRFLHRHQKLETSTQDWQINGCLGWTTIVVILSKMTTNSLQHRHCRHHHHLLCPVQRQLVVVLAGALWRIIIQQFKADVRINTGNGGIVYAHYNIVAVASPVLRDLLKQGNFCRRWRSITITGVPHDAVRVFFRYLYTSCYEKEEMEAYVLHLLVLSHVFVVPHLKRECEQKLESSFLTIDNVIDVFQISLLCDAPRLSLICHRMILSNFKAVSESEGWKAMKESHPVLEKEVLESMIEEENNKKERTRKINERKIYMQLYEAMEALVHICRDGCRTIGPCDKDFKANQPCKYAACKGLELLVRHFAACKLRVPGGCGHCKRMWQLLELHSRICSDPDGCRVPLCRNFKQRISKQSKKEEIRWKILVKKILRTRGIGIAPCFQQQ 559
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00566 559 Pfam 50S ribosome-binding GTPase 77 136 IPR006073 GO:0005525
Aip05g00566 559 Gene3D Potassium Channel Kv1.1; Chain A 236 350 IPR011333 -
Aip05g00566 559 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 68 139 IPR027417 -
Aip05g00566 559 Gene3D - 50 132 IPR027417 -
Aip05g00566 559 SMART TAZ_2 428 520 IPR000197 -
Aip05g00566 559 Pfam BTB/POZ domain 250 349 IPR000210 GO:0005515
Aip05g00566 559 Gene3D - 352 425 - -
Aip05g00566 559 SUPERFAMILY POZ domain 234 349 IPR011333 -
Aip05g00566 559 SUPERFAMILY TAZ domain 428 528 IPR035898 -
Aip05g00566 559 Coils Coil 405 425 - -
Aip05g00566 559 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 4 222 558 - -
Aip05g00566 559 Gene3D TAZ domain 426 547 IPR035898 -
Aip05g00566 559 ProSiteProfiles BTB domain profile. 251 319 IPR000210 GO:0005515
Aip05g00566 559 SMART BTB_4 251 351 IPR000210 GO:0005515
Aip05g00566 559 PRINTS GTP1/OBG GTP-binding protein family signature 77 97 IPR006073 GO:0005525
Aip05g00566 559 PRINTS GTP1/OBG GTP-binding protein family signature 123 138 IPR006073 GO:0005525
Aip05g00566 559 Pfam TAZ zinc finger 435 519 IPR000197 -
Aip05g00566 559 ProSiteProfiles Zinc finger TAZ-type profile. 424 522 IPR000197 -
Aip05g00566 559 PANTHER BTB/POZ AND TAZ DOMAIN-CONTAINING PROTEIN 3-RELATED 222 558 IPR044513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00566 Aip-Chr5 6681117 6691711 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TAZ Aip05g00566 BTB 4.6e-12 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00566 - - lja:Lj2g3v1968190.1 506.523
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00566 05 6681117 6691711 Aip05g00566 05 6681117 6691711 ECH