Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00564 ATGGGGAGCTCTCTCACTGCCACCTCTTTTTCTTTGTCAAGTCTAATGTGTGAAGAAGAAGGTGAAGCTTGCTTCTTTGAAGACAACTATGATGATGAAAATGAACACACTGGGATTGTTTTTCATGAGGAAGATGAAGAGGAATACATTGAGTATTTGTTCAGCCAAGAAACTGCTTTTGGATTCCACAATCATGATGATTGCTCCGCCGCCAGATTCTGGTTGAGGACTGCTCGTTTTGATGCCATTGATTGGATTTTCAATACACAGGCCAAACTTGGATTCAAAGTTCACACAGCTTATTTATCAGTCTCCTACTTTGATCGGTTTCTTTCAAAACGATCCATTGATGAATCAAAACCTTGGGCTATTCAATTATTATCGGTAGCATGCTTATCTCTTGCAGCAAAAATGGAAGAGCAAAATGTGCCTCCTCTCTCTGAATATCCAATAGTTGAATACAGATTTGAGAGCAAAGTGATTAAGAACATGGAGCTTCTGATTCTTGCTACCTTGGATTGGAAAATGGGATCATCATCACCAACTCCTTTTTCTTATCTCCATTACTTTCTCACAAAGTTCTGCCCTGGATCCAATTCACACACAATCATCACAAAAGCCACCCAACACATTGTAGCCATGGTCAAAGATGTTAATTTGATGGATCAACGGCCATCTATAATAGCCTCCGCTGCAATATTAGCAGCAGTTGATGCTACATTAACAAGAAAGACCATGGATCTTAGGATAAGAAAAATCTCATCTTGGGGCAATCTAGAAAGTGGAGATGTATTTTCCTGTTATAATCTTATACAGGAAAAGAGGAGGAACAAAGTTAAGACCCCTTGCTCGAATTTAATGTCAAACCAATCGAACTCCACGTGTGTTCTTGAGAATCAATCTGACACCACTTGTTCCGGAGTTAAGAGAAAACTTTCTTTTCAGGACACTGAGGAAACTGAAAACTACAAGAAGCTACATCGTCACTAG 990 0.3949 MGSSLTATSFSLSSLMCEEEGEACFFEDNYDDENEHTGIVFHEEDEEEYIEYLFSQETAFGFHNHDDCSAARFWLRTARFDAIDWIFNTQAKLGFKVHTAYLSVSYFDRFLSKRSIDESKPWAIQLLSVACLSLAAKMEEQNVPPLSEYPIVEYRFESKVIKNMELLILATLDWKMGSSSPTPFSYLHYFLTKFCPGSNSHTIITKATQHIVAMVKDVNLMDQRPSIIASAAILAAVDATLTRKTMDLRIRKISSWGNLESGDVFSCYNLIQEKRRNKVKTPCSNLMSNQSNSTCVLENQSDTTCSGVKRKLSFQDTEETENYKKLHRH 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00564 329 CDD CYCLIN 79 169 IPR013763 -
Aip05g00564 329 SMART cyclin_7 84 170 IPR013763 -
Aip05g00564 329 SMART Cyclin_C_2 181 315 IPR004367 -
Aip05g00564 329 Gene3D - 77 179 - -
Aip05g00564 329 PANTHER CYCLINS 49 311 IPR039361 -
Aip05g00564 329 Gene3D - 180 267 - -
Aip05g00564 329 Pfam Cyclin, N-terminal domain 51 176 IPR006671 -
Aip05g00564 329 Pfam Cyclin, C-terminal domain 181 288 IPR004367 -
Aip05g00564 329 ProSitePatterns Cyclins signature. 79 110 IPR006671 -
Aip05g00564 329 SUPERFAMILY Cyclin-like 39 176 IPR036915 -
Aip05g00564 329 PANTHER CYCLIN-D5-1 49 311 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00564 Aip-Chr5 6641260 6643149 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00564 77 282 Core Cell Cycle Gene Families AT1G70210 39.151 4.53e-40 142
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00564 K18811 - gmx:100798140 456.062
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00564 05 6641260 6643149 Aip05g00564 05 6641260 6643149 ECH