Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00558 ATGGATACATTGTTTAGAGTAGTGAGTTTTGAACAATACCAACAACAGCAACAAGTTGAGTTAGATCAGTCCCTCAACTCCACCACCACTACCACTACTTCCAGCAGCTCTAGATCCTCCCGACACAACTATCACCACTACCAACAACAACAACAAGACGAAGAATGCTTCAACTTTTTCATGGATGAAGAAGACCTCTCCTCGTCTTCTTCCAAGCACCACTACTATCCCTATCACTCTCAATCCCATCCCCACACTTCCACTCCTCCCGCCACCATCCTCACGCCCAACGACTTCTCCCACTCCTTCGACTTCAACCTCCAATTCTCATCAAACACCAAGTGGGCCACCGACATCCTCCTCGACGCCGCCCGTGCTCTTGCCGACAAGAACACCGCCCGTCTCCAGCACCTCATGTGGATGCTCAACGAGCTCAGCTCCCCTTACGGCGACACCGAACAGAAGCTCGCCGCCTACTTCCTTCAAGCGCTCTTCAGCCGCATGACGCATGCCGGTGATCGAACCTTCCGAACCTTAACCTCCGCCTCCGATAAGACCTGCTCCTTCGAATCAACCAGAAAGACGGTGCTCAAGTTCCAAGAGGTGTCTCCGTGGACGACCTTCGGACACGTGGCAGCCAATGGCGCAATCTTGGAAGCTTTGGAAGGTGAAACAAAGTTGCACATAGTTGATATCAGCAACACCTATTGCACTCAATGGCCAACGCTATTTGAGGCCTTGGCCACTCGCTCCGACGACACCCCGCACCTCAGGCTCACAACCGTCGTCGTAACAACTGCTCACGGCGGATCTGTCCCGGCGGCGCAGAGGGTCATGAAGGAGATAGGTGCCAGGATGGAGAAGTTCGCCAGGCTCATGGGAGTTCCGTTCAAGTTCAACGTCGTTCACCATTCCGGCGATCTCTCCCAGTTCGATTTCGGGGAATTGGACATCAGGGACGACGAGGCGCTGGCCGTTAACTGCGTCAACTCGTTGCACTCGATCGCCGCGGTTGGGAACCGCCGCGACGCGGTGATATCGTCGCTGAGAAGGCTTCAGCCCAGGATCGTGACGGTGGTGGAGGAAGAAGCCGATTTGGACGTTGGTTTGGAAGGATTCGAATTCGTGAAAGGGTTCCAAGAATGCTTGAGGTGGTTTAGGGTTTACTTTGAGGCGCTGGAGGAGAGTTTTCCGAGGACGAGTAACGAGAGGCTGATGCTGGAGAGGGCGGCGGGGAGGGCGATGGTGGACTTGGTCGCGTGCTCGGCGGAGGAATCGTCGGAGAGGAGGGAGACGGCGGCGAGATGGTCGCAGAGGATGCATGGATCGGGGTTCAATACGGCGTCATTTAGCGAGGAAGTGTGCGATGACGTTAGGGCGCTGCTGAGGAGGTACAAGGAAGGGTGGTCAATGGTACAGTGCTCGGATCACGGCGGAATGATGCTGTGGTGGAAGGAGCAGGCGGTGGTGTGGGCCAGTGCATGGAGGCCCAGCTTCACGTAG 1503 0.5569 MDTLFRVVSFEQYQQQQQVELDQSLNSTTTTTTSSSSRSSRHNYHHYQQQQQDEECFNFFMDEEDLSSSSSKHHYYPYHSQSHPHTSTPPATILTPNDFSHSFDFNLQFSSNTKWATDILLDAARALADKNTARLQHLMWMLNELSSPYGDTEQKLAAYFLQALFSRMTHAGDRTFRTLTSASDKTCSFESTRKTVLKFQEVSPWTTFGHVAANGAILEALEGETKLHIVDISNTYCTQWPTLFEALATRSDDTPHLRLTTVVVTTAHGGSVPAAQRVMKEIGARMEKFARLMGVPFKFNVVHHSGDLSQFDFGELDIRDDEALAVNCVNSLHSIAAVGNRRDAVISSLRRLQPRIVTVVEEEADLDVGLEGFEFVKGFQECLRWFRVYFEALEESFPRTSNERLMLERAAGRAMVDLVACSAEESSERRETAARWSQRMHGSGFNTASFSEEVCDDVRALLRRYKEGWSMVQCSDHGGMMLWWKEQAVVWASAWRPSFT 500
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00558 500 Pfam GRAS domain family 118 496 IPR005202 -
Aip05g00558 500 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 496 IPR005202 -
Aip05g00558 500 ProSiteProfiles GRAS family profile. 107 496 IPR005202 -
Aip05g00558 500 PANTHER PROTEIN SHORT-ROOT 1 496 IPR030019 GO:0003700|GO:0005634|GO:0008356|GO:0009956|GO:0043565|GO:0048366
Aip05g00558 500 MobiDBLite consensus disorder prediction 20 48 - -
Aip05g00558 500 MobiDBLite consensus disorder prediction 71 93 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00558 Aip-Chr5 6582918 6585155 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00558 1 498 GRAS Transcription Factor Family AT4G37650 62.639 0.0 620
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Aip05g00558 GRAS 1.6e-107 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00558 - - gmx:100820459 668.307
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00558 05 6582918 6585155 Aip05g00558 05 6582918 6585155 ECH
Aip05g00558 05 6582918 6585155 Aip01g01122 01 25300840 25302898 PCT