Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00554 ATGGGTGCGCCTAAGCAGAAATGGACTGCAGAAGAAGAAGCAGCGCTCAAAGCTGGAGTAGTCAAACATGGGGCTGGAAAATGGCGCACAATACTTACAGACCCAGAGTTTAGTGCCATTCTGCGCATGCGATCAAATGTAGATCTCAAGGACAAATGGAGGAATATAAATGTGACAGCAATATGGGGATCCAGGCAGAAAGCAAAGCTTGCCCTAAAAAAGAACCTACCAATTCCCAAAATTGACTGTAACCACATGGCCATAAGTACTGTAGTTCAACGGGATGAAGTTGCTGATTATAAGCCTCTGGCAATTTCTGGCGGAGCATCACAATCTGCTAATTCAAAAGAACACATATCAAGCAGCAATATGCGTTTTGACAGTGGCAGGTTGGATACTCTCATACTAGAGTCCATTATCAAGTTAAAAGAGCCGAAAGGTTCTGACCGGGCTGCCATTGCTGCTTACATAGAGGATCAATACTCATGTCCTCCGAACCTCAGAAAGTTACTGTCAGCAAAACTGAAGCATATGGTAGCAAGTGGAAAGTTAATGAAGGTAAAGCATAAGTACAGAATTACAGGAAATTCAACAATCTCTGAGAAGAGAAGAGGCTCTTCCTTGTTACTTTTGGAAGGAAGGCCAAAAGATTCCCCCAAATCAGAGAAGACTGATGTCAGCCTCCTTTCAAAATCCCAAATTGATGCAGAGCTATCAAAAATGAAAGGTGTGACAGCTCAAGAGGCAGCGGCTGCAGCTGCAAAAGCAGTTGCAGAAGCTGAAGTTGCCATTGCTGAGGCTGAGGCAGCAGCTAGGGAGGCAGAAGCTGCAGAAGCGGAAGCAGAGGCTGCACGGGTATTTGCAAAAGCAGCAATGAAAGCACTAAAATGCAAAGCGCTTCATATCTGA 909 0.4477 MGAPKQKWTAEEEAALKAGVVKHGAGKWRTILTDPEFSAILRMRSNVDLKDKWRNINVTAIWGSRQKAKLALKKNLPIPKIDCNHMAISTVVQRDEVADYKPLAISGGASQSANSKEHISSSNMRFDSGRLDTLILESIIKLKEPKGSDRAAIAAYIEDQYSCPPNLRKLLSAKLKHMVASGKLMKVKHKYRITGNSTISEKRRGSSLLLLEGRPKDSPKSEKTDVSLLSKSQIDAELSKMKGVTAQEAAAAAAKAVAEAEVAIAEAEAAAREAEAAEAEAEAARVFAKAAMKALKCKALHI 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00554 302 SMART h15plus2 125 190 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip05g00554 302 PANTHER SINGLE MYB HISTONE 4 1 302 IPR044597 GO:0003691
Aip05g00554 302 Gene3D - 2 59 - -
Aip05g00554 302 ProSiteProfiles Linker histone H1/H5 globular (H15) domain profile. 127 195 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip05g00554 302 CDD SANT_TRF 6 57 - -
Aip05g00554 302 SUPERFAMILY "Winged helix" DNA-binding domain 130 204 IPR036390 -
Aip05g00554 302 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 61 IPR017930 -
Aip05g00554 302 Pfam linker histone H1 and H5 family 132 189 IPR005818 GO:0000786|GO:0003677|GO:0006334
Aip05g00554 302 Coils Coil 250 284 - -
Aip05g00554 302 SUPERFAMILY Homeodomain-like 2 65 IPR009057 -
Aip05g00554 302 Pfam Myb-like DNA-binding domain 5 56 IPR001005 -
Aip05g00554 302 Gene3D - 128 207 IPR036388 -
Aip05g00554 302 ProSiteProfiles Myb-like domain profile. 5 57 IPR001005 -
Aip05g00554 302 SMART sant 4 59 IPR001005 -
Aip05g00554 302 PANTHER MYB TRANSCRIPTION FACTOR 1 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00554 Aip-Chr5 6549792 6554432 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00554 1 298 Single Myb Histone (SMH) Gene Family AT5G67580 55.298 3.22e-79 241
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Aip05g00554 Linker_histone 2.2e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00554 K09422 - gmx:100796539 388.267
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00554 05 6549792 6554432 Aip01g01127 01 25499374 25502323 PCT