Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00548 ATGATTTGGGTGAAAACCAACTCTTTGTTGGTCAGAAATATTTATGACGCTTTTGAACCATTTATTTTGAAGATTCAACACCAAGCTAGGCATGGGGATGAATCATATACAGCACTTCAAACCACAGAGGAGAGCTTGCAAGTGGAGTCAAATAATGATTCTCATGGTCATGAAGAGTTTGATCTTGCGCATTCAGAATTATCAAGTGTATTCTATGAGAAAGTTCTAGTTCTGGCATGGGGGTACAATAATGTGATTATCCTGATAGTGGGTATCGGAGTATTACTCGTCATGGAAACCCTGAGTGCCTTTTTGCATCCTTCTCGTTTGCATTGCTAG 339 0.3953 MIWVKTNSLLVRNIYDAFEPFILKIQHQARHGDESYTALQTTEESLQVESNNDSHGHEEFDLAHSELSSVFYEKVLVLAWGYNNVIILIVGIGVLLVMETLSAFLHPSRLHC 112
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00548 112 PANTHER VACUOLAR PROTON ATPASES 61 111 IPR002490 GO:0033179|GO:0046961|GO:1902600
Aip05g00548 112 PANTHER VACUOLAR PROTON ATPASES 19 62 IPR002490 GO:0033179|GO:0046961|GO:1902600
Aip05g00548 112 Pfam V-type ATPase 116kDa subunit family 62 111 IPR002490 GO:0033179|GO:0046961|GO:1902600
Aip05g00548 112 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 61 111 - -
Aip05g00548 112 PANTHER V-TYPE PROTON ATPASE SUBUNIT A 19 62 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00548 Aip-Chr5 6485352 6486265 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00548 19 111 Primary Pumps ATPases(2) AT2G21410 52.239 2.12e-33 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00548 K02154 - lja:Lj3g3v0129330.1 126.716