Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00535 ATGAATCATGCCTCAACTCAAATGATGAAGACCCTCCTAGATGCTGACACCTTTGTTAACTTGAACAATCAAAATAATATAGTAGGTGTTCCTTCACACCCTTCTTCTTCTGCTTCTGTAGAAGCAGTTCTACCACCAAGCTTTTGCTGTTACTATGGAGTTGAAGGTGAAAATGTTGGATGGTATCCACCACTCCCTGTCTTGCCCCTTAAATCCGATGGCTCTCTCTTTGACATAGAAGCTCTCAGCAGAACAAAACAACAAGCACCAAAACTGGAGGATTTCTTTGGTGGGCAAAGCCAAGAATGCAACAACGCCAGAGAAGCACTGCCTCTGAGCTATAACATGTTTCACAATCCAAATTATCTAAATCATGTACAAGAGAATATCAACTTGCTTCAGAACCAGCAGCATGATGTTAACCAGCAACACTCATCATATTATTCTTCTGCATCAAGAAACAACAACAACCATCATCAGGTGATGCTACAAGGATACAATATGGTTAAGGAGGAAGTGCCTGGTATCCACCATGCAATGGAGGCAAAGCTGGTTGTTCCTTTGGAGGATAATAGAGGTGAATCGCTGTCCATTGGATCGGTGGCGTTCGGGGATTTACAGTCACTGAGGTTGTCCACGAGTCCAAGCTCCCAATCAAGTTGTGTCACAACCTCACAACAAGCATCACATGCTGTCATGAGCACTACAAAGAAGAGGGTGCATGATGAAATGGTGGAGCAGAACCAGAAGCAAATTGCTCATAGAAAATCCATTGATACCTTTGGCCAGAGAACATCTCAATATAGAGGTGTTACAAGGCATAGGTGGACTGGTAGATATGAAGCTCATCTATGGGACAATAGTTGCAAGAAAGAGGGTCAGAGTAGGAAAGGAAGGCAAGTTTATCTAGGGGGTTATGATATGGAAGAAAAAGCAGCGAGAGCTTATGATTTGGCTGCACTCAAGTATTGGGGACCCTCCACTCATACAAACTTCCCATTGGAAAATTATCAAAATGAACTTGTGCAAATGAAGAACATGACTAGGCAGGAATATGTTGCTCATTTACGAAGAAAAAGCAGCGGATTCTCAAGAGGGGCTTCAATCTACAGAGGAGTAACAAGACACCATCAGCATGGAAGGTGGCAAGCCCGAATTGGAAGAGTGGCTGGAAACAAAGATCTATATCTTGGGACATTCAGTACCCAAGAGGAAGCTGCTGAAGCATACGACATTGCTGCTATAAAATTCCGAGGAGTTAATGCAGTAACTAACTTTGAAATAATCAGATACGATGTGGAAAAAATTATGGCAAGCAATGACCTTCTTAGCATTGAACAAGCTAGGAGAAAAAGAGAGGTCATTGTTAATAATAACCATAAACCATCTACATATGATGAAGAATCGATTCTAATGCACAAGAGCTGCAAAAACCCTCAGATCATGATGATTAATCATCCACCAACAATGGCATTAGAGGAGGAATCAAGTAGTAAGATTGGAACACATATTTCAAATGAAGATAAGACAGGTTTGCCAATTCTCTATGGAAGACCTTCAACAACAGCAGCCTCTACTAGATTACTGGCTACCATTCCAACCGGTTGGGACCAACCACCATCACATCTGAGACCTAATAAGCTTTCCTTGCCTCAGATGCCAGTTTTTGCTGCATGGACAGACGCATAA 1689 0.421 MNHASTQMMKTLLDADTFVNLNNQNNIVGVPSHPSSSASVEAVLPPSFCCYYGVEGENVGWYPPLPVLPLKSDGSLFDIEALSRTKQQAPKLEDFFGGQSQECNNAREALPLSYNMFHNPNYLNHVQENINLLQNQQHDVNQQHSSYYSSASRNNNNHHQVMLQGYNMVKEEVPGIHHAMEAKLVVPLEDNRGESLSIGSVAFGDLQSLRLSTSPSSQSSCVTTSQQASHAVMSTTKKRVHDEMVEQNQKQIAHRKSIDTFGQRTSQYRGVTRHRWTGRYEAHLWDNSCKKEGQSRKGRQVYLGGYDMEEKAARAYDLAALKYWGPSTHTNFPLENYQNELVQMKNMTRQEYVAHLRRKSSGFSRGASIYRGVTRHHQHGRWQARIGRVAGNKDLYLGTFSTQEEAAEAYDIAAIKFRGVNAVTNFEIIRYDVEKIMASNDLLSIEQARRKREVIVNNNHKPSTYDEESILMHKSCKNPQIMMINHPPTMALEEESSSKIGTHISNEDKTGLPILYGRPSTTAASTRLLATIPTGWDQPPSHLRPNKLSLPQMPVFAAWTDA 562
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00535 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ANT ISOFORM X1 46 560 - -
Aip05g00535 562 SUPERFAMILY DNA-binding domain 368 427 IPR016177 GO:0003677
Aip05g00535 562 CDD AP2 266 333 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 SMART rav1_2 369 433 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 SMART rav1_2 267 339 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 Gene3D AP2/ERF domain 266 335 IPR036955 GO:0003700|GO:0006355
Aip05g00535 562 Gene3D AP2/ERF domain 369 429 IPR036955 GO:0003700|GO:0006355
Aip05g00535 562 Coils Coil 123 143 - -
Aip05g00535 562 ProSiteProfiles AP2/ERF domain profile. 267 333 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 ProSiteProfiles AP2/ERF domain profile. 369 427 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 PRINTS Ethylene responsive element binding protein signature 268 279 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 PRINTS Ethylene responsive element binding protein signature 409 429 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 CDD AP2 368 428 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 Pfam AP2 domain 369 419 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 Pfam AP2 domain 267 325 IPR001471 GO:0003700|GO:0006355
Aip05g00535 562 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 46 560 - -
Aip05g00535 562 SUPERFAMILY DNA-binding domain 266 335 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00535 Aip-Chr5 6317780 6320743 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00535 48 562 AP2-EREBP Transcription Factor Family AT4G37750 49.731 8.03e-160 466
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Aip05g00535 AP2 1e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00535 K09285 - gmx:100792451 584.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00535 05 6317780 6320743 Aip01g01158 01 26948979 26954751 PCT