Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00520 ATGGGAAGAGCACCTTGCTGTGACAAAGCGAACGTGAAGAAAGGGCCATGGTCGCCTGAAGAAGACGCAAAACTCAAGTCCTACATCGAGCAGCACGGCACCGGAGGCAACTGGATCGCCCTCCCTCAGAAGATAGGGCTTAAGAGATGCGGGAAAAGCTGTCGTCTAAGATGGCTGAATTATCTTCGGCCGAACATCAAACACGGTAGTTTCTCAGAAGAAGAAGACAACATAATCTGCACCCTGTATGTTAGTATTGGAAGCAGGTGGTCTATTATAGCAGCACAGTTACCAGGGCGCACAGACAATGACATCAAGAACTACTGGAACACCAGGCTCAAGAAGAAGCTCCTTGCAAAGCAAAGGAAACTAGACCAACCTCCTCCTATTCCTTATTGCAATTCCTCTTCTAATTCTTCTTCTTCTTCTTCTTCAGTTCCACAACTAGTAGTACCACCTGCACCGCCTTCCATCCACGACTACGATTTCACCTCCCTCATATCCTCCTTCCCACAGCAACACCACCACCTTTATCCACCGGCAAATATGTATCACCATCAGCAAGGCTTTGAAAGCTTGATAGATGATGATTTGAGCCATCTCATGGCGTGTGTAGTCAGTAATGAACAGGGTTTTTATGGCAGCACCACTTCAACAGAGAGCACTACTACTAGTTGGGGACCTGATATGACCTCTCTCGTTAACTACTCATCATCACCACCACCACCACTGCTTTATCAAGATGACGCTTCACCTGCTTCTAGGTACTTTGGAATGCAAATGCTATAA 789 0.4677 MGRAPCCDKANVKKGPWSPEEDAKLKSYIEQHGTGGNWIALPQKIGLKRCGKSCRLRWLNYLRPNIKHGSFSEEEDNIICTLYVSIGSRWSIIAAQLPGRTDNDIKNYWNTRLKKKLLAKQRKLDQPPPIPYCNSSSNSSSSSSSVPQLVVPPAPPSIHDYDFTSLISSFPQQHHHLYPPANMYHHQQGFESLIDDDLSHLMACVVSNEQGFYGSTTSTESTTTSWGPDMTSLVNYSSSPPPPLLYQDDASPASRYFGMQML 262
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00520 262 ProSiteProfiles Myb-like domain profile. 9 62 IPR001005 -
Aip05g00520 262 SMART sant 13 64 IPR001005 -
Aip05g00520 262 SMART sant 67 115 IPR001005 -
Aip05g00520 262 Gene3D - 69 129 - -
Aip05g00520 262 PANTHER OS09G0431300 PROTEIN 1 142 - -
Aip05g00520 262 CDD SANT 16 62 IPR001005 -
Aip05g00520 262 PANTHER OS09G0431300 PROTEIN 1 142 - -
Aip05g00520 262 MobiDBLite consensus disorder prediction 130 148 - -
Aip05g00520 262 Pfam Myb-like DNA-binding domain 14 62 IPR001005 -
Aip05g00520 262 Pfam Myb-like DNA-binding domain 69 111 IPR001005 -
Aip05g00520 262 SUPERFAMILY Homeodomain-like 11 109 IPR009057 -
Aip05g00520 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 62 IPR017930 -
Aip05g00520 262 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
Aip05g00520 262 CDD SANT 70 113 IPR001005 -
Aip05g00520 262 Gene3D - 7 68 - -
Aip05g00520 262 MobiDBLite consensus disorder prediction 124 149 - -
Aip05g00520 262 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00520 Aip-Chr5 6101172 6102072 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00520 1 123 MYB Transcription Factor Family AT3G49690 92.683 2.35e-84 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g00520 Myb_DNA-binding 1.5e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00520 K09422 - gmx:106795158 256.914