Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00518 ATGGGTCTTGATCAAGATGCCAACAACAATAACAATAATAAGTCCTCCTCCTCAGGCCTCGAGCTTGTTCTAGGGTTATCTCTCACCACCACCACGGCCACACCACCTCCTCCGTCAAGCAAACCCAAGCCGTATTCCTGTCATCATGAGGCACCAGAGCCATCTCTAACGCTGGGTCTATCCGGCGAGAGCTTCCAGCAGGTTCTGAAAAGCAATAATAATAAAGGCGCAGAGGAGCCTACAAGTGGTGAAATGTGTAGACAGGCTTCATCGCCACACAGTAGCGCAGTTTCGTCGTTCTCAAGTGGGGGGTGCAGGGTGGTGGGGGCGTGCGTGAAGAGGGAGAGGGATCTTAGCAGCTGTGAAGAGGCAGATGGTGATGGCGATGGCGAGAGAGTTTCTTCGAGAGTGAGCGACGAAGACGAAGACGGCAGCAATGCCCGAAAGAAGCTGAGGCTCACAAAGGAACAATCTGCTCTTCTTGAAGATAGCTTCAAACAACACAGCACTCTCAATCCTAAACAGAAGCAAGCTTTGGCGAGGCAGTTAAATCTGAGGCCTCGGCAAGTAGAAGTGTGGTTCCAGAATAGGAGAGCGAGAACAAAGCTGAAGCAGACGGAAGTGGACTGCGAGTTCTTGAAGAAATGCTGCGAAACATTGACGGACGAGAACAGAAGGCTAAAGAAGGAGCTTCAAGAACTGAAGGCGCTCAAGCTGGCACAACCCTTGTACATGCCTATGCCGGCGGCAACGCTCACCATCTGCCCCTCTTGCGAGAGGCTCTCCAACGACCCCCCCGCCAAGCCTCACTTCTATAACCCCTTCACCAACCCCTCTGCAGCATGTTGA 849 0.5253 MGLDQDANNNNNNKSSSSGLELVLGLSLTTTTATPPPPSSKPKPYSCHHEAPEPSLTLGLSGESFQQVLKSNNNKGAEEPTSGEMCRQASSPHSSAVSSFSSGGCRVVGACVKRERDLSSCEEADGDGDGERVSSRVSDEDEDGSNARKKLRLTKEQSALLEDSFKQHSTLNPKQKQALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCEFLKKCCETLTDENRRLKKELQELKALKLAQPLYMPMPAATLTICPSCERLSNDPPAKPHFYNPFTNPSAAC 282
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00518 282 Coils Coil 210 240 - -
Aip05g00518 282 SMART HOX_1 146 208 IPR001356 GO:0003677
Aip05g00518 282 ProSiteProfiles 'Homeobox' domain profile. 144 204 IPR001356 GO:0003677
Aip05g00518 282 MobiDBLite consensus disorder prediction 119 152 - -
Aip05g00518 282 MobiDBLite consensus disorder prediction 59 102 - -
Aip05g00518 282 Gene3D - 141 209 - -
Aip05g00518 282 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HAT22-LIKE 15 282 - -
Aip05g00518 282 Pfam Homeobox associated leucine zipper 204 238 IPR003106 GO:0006355|GO:0043565
Aip05g00518 282 Pfam Homeodomain 148 202 IPR001356 GO:0003677
Aip05g00518 282 ProSitePatterns 'Homeobox' domain signature. 179 202 IPR017970 GO:0000981|GO:0006355
Aip05g00518 282 SUPERFAMILY Homeodomain-like 137 205 IPR009057 -
Aip05g00518 282 CDD homeodomain 148 205 IPR001356 GO:0003677
Aip05g00518 282 PANTHER - 15 282 - -
Aip05g00518 282 SMART halz 204 247 IPR003106 GO:0006355|GO:0043565
Aip05g00518 282 MobiDBLite consensus disorder prediction 1 103 - -
Aip05g00518 282 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00518 Aip-Chr5 6066639 6067565 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00518 1 282 Homeobox Transcription Factor Family AT4G37790 55.627 5.75e-92 272
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Aip05g00518 Homeodomain 1.9e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00518 K09338 - gmx:100784129 298.516
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00518 05 6066639 6067565 Aip01g01173 01 28184900 28187196 PCT