Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00505 ATGATGGAAATTGCATCCAGCAACTACTTGGCTGAATTTGGAATGGAAGAATATTCTAGCAGCTTCCAGGAATACCCGATGATGATGAATTCATTTGAAGAAATGCTTGATAAGTTTGAGATGGACATGCAATCTATGTCATCAGCCTCCCCAGAGTGTTATTCCAACTCTGAAACCAAACCACCACCACATCAACTTCAAACCCCTTTAAACACCATTACTACTACTACTACTACTGCTGCCATGCCTTCTAGATCCGCGTCTCCATCACCACCCAAACTGATCTCCTTTGAGGCACCGTCTCTTCCTAATTCTTCCAACATTAAGAACCCTAATCTGATGATGGACGACCACATTCCCTTCTCTGCTTTCTTCAACTATGATAATCCACCGCATAAGGTCCTTCCCGCCACAGCTAGGAATCCAGTCCAAGCTCAGGAGCATGTAATCGCCGAAAGAAAACGCCGGGAAAAGCTCAGCCAGAGGTTCGTCGCTCTTTCCGCCATGGTCCCTGGCCTCAAGAAGATGGACAAGGCTTCAATATTGGGAGATGCCATAAAATATGTGAAGCAACTACAGGAACGAGTGCAGTTTTTGGAGGAGGAGAAGGCTAGAAAGAAAAGTATGGTTGAATCAGGGGTGGCAGTAAAGAGATGTTTCGTGTTTGTTGACGATGAAGATAATAATGAGAACGAAATTTCAGCAGCAGCAGCATTATTGGATGGAAATTGTAATACACTTCCGGAAATCAAAGCAAGAGTTAGTGGTAAAGACGTACTCATCAGAATCCACTGCCATAAACAAGAGTGCAAGAACAGTAGTAGGGGTGCTCGTGAGGCTGCAATACTCTCCGTATTAGAGAAGCATAATCTCACTGTTCACACAACCACCTCTTTGCCCTTCGGCAATGACACTCTCGATATCACTATTCTCGCTCAGATGAACAAGGAATACTCCATTAGGACAAAGGATCTAGTAGGAAGCCTACGGGTGGCTTTGACACAATTCAGTTGA 1014 0.4438 MMEIASSNYLAEFGMEEYSSSFQEYPMMMNSFEEMLDKFEMDMQSMSSASPECYSNSETKPPPHQLQTPLNTITTTTTTAAMPSRSASPSPPKLISFEAPSLPNSSNIKNPNLMMDDHIPFSAFFNYDNPPHKVLPATARNPVQAQEHVIAERKRREKLSQRFVALSAMVPGLKKMDKASILGDAIKYVKQLQERVQFLEEEKARKKSMVESGVAVKRCFVFVDDEDNNENEISAAAALLDGNCNTLPEIKARVSGKDVLIRIHCHKQECKNSSRGAREAAILSVLEKHNLTVHTTTSLPFGNDTLDITILAQMNKEYSIRTKDLVGSLRVALTQFS 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00505 337 Gene3D - 143 217 IPR036638 GO:0046983
Aip05g00505 337 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 143 192 IPR011598 GO:0046983
Aip05g00505 337 PANTHER BHLH TRANSCRIPTION FACTOR 8 336 - -
Aip05g00505 337 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 147 206 IPR036638 GO:0046983
Aip05g00505 337 Pfam Helix-loop-helix DNA-binding domain 146 193 IPR011598 GO:0046983
Aip05g00505 337 SMART finulus 149 198 IPR011598 GO:0046983
Aip05g00505 337 PANTHER TRANSCRIPTION FACTOR NAI1 8 336 - -
Aip05g00505 337 Coils Coil 182 209 - -
Aip05g00505 337 MobiDBLite consensus disorder prediction 47 68 - -
Aip05g00505 337 CDD bHLH_AtNAI1_like 145 217 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00505 Aip-Chr5 5858222 5859632 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00505 139 336 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 48.744 3.24e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00505 HLH 3e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00505 - - aip:107642660 648.277
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00505 05 5858222 5859632 Aip05g00505 05 5858222 5859632 ECH
Aip05g00505 05 5858222 5859632 Aip01g01198 01 29777255 29780073 PCT