Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00504 ATGATTTCCACCGAGGAATCATGGACTACTTGGCTTTGTGATTTGGAAGAAGAGGACTACAGTTTCATCAATGGCATAATAGCAGACCCTAATAATTACTCAAACTCACAGATGAGTAACAATGATAATGAGAGGCCATCCAAGCTTCTCAAGAGCACCACCCCAACCCCAACAAGACGCAGAAGAACTGGCTCAGCTGGCACTGGCAGATCCCCCCAACACGCCCATGATCACATCATTGCCGAAAGAATGAGAAGGGAAAAGATTAGCCAACAGTTCATAGCACTTTCTGCCCTTATTCCAGGCCTCAAAAAGATGGACAAGGCGACGGTGTTAGGCGACGCTATCAAGTACGTGAAGCAGCTACAAGAGCAAGTGAAGGTTCTAGAAACTGAAAGCAAAAGGAAAAGCGCGGAGTCTGTTGTGTATGTTGAGAAATCTGAGGTGTGCGGAGAGGAAGATGTGTCAGACACTTGGTCAAATTCAGGGGGGGATGGAAACTCATCGTACGAAGTCTCAAAAGCAGTGAGTAGGTCGGTGCTGCCTGAAGTGGAGGCAAGAGTGTCTGAGAAGAACGTCCTCATTCGGATCCACTGCGAGAAACACAAAGGAGTGTTGATGCACATTCTCAAGCTCATTGACAAACTCCATCTCTCTGTTCTTAACACCACTTCCTTGCCTTTTGGAACCTCCATCGTCGACATAACCGTCACTGCCGAGATGGATGACAAGTTCAGCTTAAGCGCGAAGGAGCTTGCTAGAAACATAAGGGTGGGACTGTTGCAATCGATGTAG 795 0.473 MISTEESWTTWLCDLEEEDYSFINGIIADPNNYSNSQMSNNDNERPSKLLKSTTPTPTRRRRTGSAGTGRSPQHAHDHIIAERMRREKISQQFIALSALIPGLKKMDKATVLGDAIKYVKQLQEQVKVLETESKRKSAESVVYVEKSEVCGEEDVSDTWSNSGGDGNSSYEVSKAVSRSVLPEVEARVSEKNVLIRIHCEKHKGVLMHILKLIDKLHLSVLNTTSLPFGTSIVDITVTAEMDDKFSLSAKELARNIRVGLLQSM 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00504 264 SMART finulus 79 128 IPR011598 GO:0046983
Aip05g00504 264 PANTHER BHLH TRANSCRIPTION FACTOR 3 39 - -
Aip05g00504 264 PANTHER BHLH TRANSCRIPTION FACTOR 60 261 - -
Aip05g00504 264 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 77 139 IPR036638 GO:0046983
Aip05g00504 264 Pfam Helix-loop-helix DNA-binding domain 78 123 IPR011598 GO:0046983
Aip05g00504 264 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 3 39 - -
Aip05g00504 264 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 60 261 - -
Aip05g00504 264 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 73 122 IPR011598 GO:0046983
Aip05g00504 264 Coils Coil 112 139 - -
Aip05g00504 264 MobiDBLite consensus disorder prediction 33 70 - -
Aip05g00504 264 Gene3D - 72 142 IPR036638 GO:0046983
Aip05g00504 264 MobiDBLite consensus disorder prediction 33 76 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00504 Aip-Chr5 5851623 5853182 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00504 58 260 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G22770 43.689 3.27e-50 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00504 HLH 1.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00504 - - ahf:112748090 460.685
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00504 05 5851623 5853182 Aip01g01202 01 30142205 30147787 PCT