Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00503 ATGGAGGAATTAAACGCATCGGCAACCAACTGGTTATCTGATCTGGATATAGATGATTACGAATTGTTTTCAGAGTGCAATTTGAAGAAGTTTCTGGATGAGGATGAAGAGAATCAGTTTGATGAGATGGTGATGAGTGCAGTGCTGGGGGAGGAGGAGGAAGAGGAGGAGGAGAGGCCAACTAAGCAACTGAGAACTTGCTCATCATCAAGCATCACTAATTACGTCTCATCTAATTCTTCTTCTTCTTCTTCTCCCACCTCCCAGATTCTCTCTTTTGAAAACTCTTACAACCCATCCTCCCAGTTTTATGGCTTTGAATTTGATGCAACTCCTAATGATAAGGTTTCACCGCAACCACAAGTTGGTAATAACAATGATAAGAACAAGGTGGAACAAACAAGGAAACCTCAAAGCCAAGGGAGTAAAAGACACGCGGCTCACTCTCACGATCACATCATGGCTGAGAGAAAGCGAAGGGAGAAGCTCAGCCAAAGCTTGATCGCCCTTGCAGCTCTTATTCCAGGCTTAAAAAAGATGGATAAGGCTTCGGTACTGGGAGATGCAATCAAGTACGTGAAAGAGCTTCAGGGACGATTGAAGGTTCTAGAAGAAGAGAACAAGAGAGAGGTGGAGTCTGTGGTGATTGTGAAGAATCCACGCTTCATCACGAGCAGTAGCGACGATGACTCCTCTTCGTGTGATGATGACACCTTGGAAGCAGACGGCGAAGCAGCAGTGGCACACGTGGAAGCAAGAGTGGCGGCGGCCGAGAAGGAGGTGCTGCTCCGGATCCATTGCAAGAAACAGAAGGGCATTTACGTCAAATTACTGTCGGAGATACAAAGCCTTCACCTGTATGTGGTCCATAGCAGTGTGCTACCGTTCGGGGATTCGGTTCTCGACATAACCATCGTCGCTCAGATGGGCACAGAGTACAAGTTGAGCATAAGAGATCTTGTGAGGAATCTACGCGTGGCTACACTGAAAACGATGTCGTCGTCATAG 1008 0.4683 MEELNASATNWLSDLDIDDYELFSECNLKKFLDEDEENQFDEMVMSAVLGEEEEEEEERPTKQLRTCSSSSITNYVSSNSSSSSSPTSQILSFENSYNPSSQFYGFEFDATPNDKVSPQPQVGNNNDKNKVEQTRKPQSQGSKRHAAHSHDHIMAERKRREKLSQSLIALAALIPGLKKMDKASVLGDAIKYVKELQGRLKVLEEENKREVESVVIVKNPRFITSSSDDDSSSCDDDTLEADGEAAVAHVEARVAAAEKEVLLRIHCKKQKGIYVKLLSEIQSLHLYVVHSSVLPFGDSVLDITIVAQMGTEYKLSIRDLVRNLRVATLKTMSSS 335
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00503 335 PANTHER BASIC HELIX LOOP HELIX (BHLH) DNA-BINDING FAMILY PROTEIN 3 333 - -
Aip05g00503 335 SMART finulus 153 202 IPR011598 GO:0046983
Aip05g00503 335 PANTHER BHLH TRANSCRIPTION FACTOR 3 333 - -
Aip05g00503 335 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 147 196 IPR011598 GO:0046983
Aip05g00503 335 Coils Coil 186 213 - -
Aip05g00503 335 Gene3D - 137 212 IPR036638 GO:0046983
Aip05g00503 335 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 152 210 IPR036638 GO:0046983
Aip05g00503 335 MobiDBLite consensus disorder prediction 108 157 - -
Aip05g00503 335 MobiDBLite consensus disorder prediction 64 91 - -
Aip05g00503 335 Pfam Helix-loop-helix DNA-binding domain 152 197 IPR011598 GO:0046983
Aip05g00503 335 MobiDBLite consensus disorder prediction 114 128 - -
Aip05g00503 335 MobiDBLite consensus disorder prediction 129 157 - -
Aip05g00503 335 MobiDBLite consensus disorder prediction 50 91 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00503 Aip-Chr5 5834411 5835652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00503 8 327 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G37850 35.693 9.52e-52 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00503 HLH 2.9e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00503 - - adu:107487595 570.852