Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00499 ATGACCAAACCACCCTCCGCCTTCGACGCTCTCATGTCCGGTGCCCGCGCCGCCGCGTCCGCCGCTGCCAAGAAGAAGAAATCCGAGCAGTCGCAGCAACCAACTGCTTCTTCTTCCAAGAAGCGAAAACCTTCATCCTCCACTCTCCCCACTCCAACCTCCACGCTAAACCCTAACGTAGAACCGGAGAAAGAAGGCCCTACTCCGACCAAGACTCGCCACGTGTCTTCTTCATCTGCCTTGCAGGAGCTGAAGAAGCGCGTTCCGCAGCTGACGGCGAAGCCTTCGAAATTCGATCCTAGCTCAGTGGCTTGTTGGGAGAAGGGCACGCCTGTGCCGTTCTCGTTACTGGCGTTGGCGCTTCACATGATTTCTCTGGAGCCTGGCAGAATCAAGATGACAGATATTGCGTGCAATTTGATGAAGACTGTGATATACTCTACCCCTGAGGATCTTGTGCCTCTGATTTATCTCTTGGCGAAGAGGGTTGCTCCGGCGCATGAAGGGCTAGAATTGGGAATTGGCGAGACTTCCATTATTAAGGCACTTGCTGAGGCGACTGGAAGAACTGAATCCAAAATCAAGAAGCTGTATCAGAAAGTGGGTGATTTGGGAAAAGTTGCCAAGGAGTGCCGTTCATCTCAGTCCATGATGCGGAAACCTGAGGCTCTGACTATTAGGAAGGTTTTCAACACCTTCCGTCTTATTGCCAAGGAATCTGGAAGAGACAGTCAAATGAAGAAAAAGAATCATATAAAGGCACTTCTTGTTTCTGCAACTGACTGCGAACCTCAATATCTTATCCGTTTTCTACAGGGAAAATTGCGGATTGGTGTGGCTGAGCAAACTCTCTTAGCTGCATTAGGCCAAGCAGCAGTACAGAGTGAAGAACATTCTAAACCACCTGCTGGTATTAAGTCTCCTTTGGAAGAGGCTGTAAAAATTGTTAAACAAGTCTATTCTGTTCTTCCTGTCTATGACGAAATAGTATCTGCACTTCTTACACATGGTGTATGGAAACTTCCATCAACATGTAATTTTACTCCTGGTATTCCAGTTGGACCTATGCTGTCAAAACCGAGGAAGGGTATCTCTGATATTCTAAATTCATTGCAAGATGTGCAGTTTACTTGTGAATACAAGTACGATGGAGAGCGTGCCCAGGTACATTACATGGAAAATGGTTCAGTTGAGATTTATAGTAGAAATGCTGAGCGGAATACTGGGAAGTTTCCTGATGTTGTTGCTGCAATTTCAAGGTTAAAGAAATCAACTGTATCATCATTTGTTCTTGATTGTGAAATTGTTGGATATAATCGTGAGAAACAGACCATCCGTCCTTTCCAGGATCTTACTACTCGGCCTCGTAAAAATGTATCTGTGGATAATATAAAGGTTGACGTCTGCATATTTGCTTTTGATATACTGTATCTTAATGGCCGAGTACTTCTTCAGGATAACCTGAAAATCCGTAGAGAGCATCTTTATGCCTCTTTTGAAGAAGAAACTGGAGTTTTTCAGTATGCAACGGCAATAACATCAAATGACACCGAGGAAATTCAGAAATTTCTCGACAAAGCTGTTGGATCAAGCTGTGAGGGATTAATCATTAAAACTTTAAATGAAGATTCTACATATGAACCTTCCAATCGGTCAAACAATTGGCTAAAACTGAAGAAAGATTATCTGGATAACATAGGGGACTCGATAGATTTGGTACCTATAGCTGCATTCCACGGACGTGGGAAACGTACAGGAGTCTATGGTGCTTTTCTTCTTGCTTGCTATGACTACAATAACGAAGAATTTCAAAGTATTTGTAAGATTGTAGGAACGGGATTTACTGAAGAAGTGCTCGAAGAGCGTTCTAAAAGTCTTGGTTCTCAAGTGATTCCTGGGCCAAAGCGATACTATCGATATGGAGATAAAATGAAGCCTGATGTCTGGTTTGAAGCTAGTGAGGTGTGGGAGGTGAAAGCTGCAGATTTGACCATCAGCCCAGTTCACCGAGCTGCAGTGGGCATAGTAGATTCAGATAAGGGCATATCTCTTAGATTCCCACGGCTAGTTCGAGTTCGACCTGACAAAACACCCGAGCAGGCCTCATCATCTGAGCAGGTTGCTGAGATGTATAATGTTCAAAAAGCCACTCAAACTAAAGAAAAAGAAAAAGAAAAAGAAACCACCAAACAGGATGGTAGTGAATCACCAAAAAAAACAGATTTGCAGTGA 2232 0.4391 MTKPPSAFDALMSGARAAASAAAKKKKSEQSQQPTASSSKKRKPSSSTLPTPTSTLNPNVEPEKEGPTPTKTRHVSSSSALQELKKRVPQLTAKPSKFDPSSVACWEKGTPVPFSLLALALHMISLEPGRIKMTDIACNLMKTVIYSTPEDLVPLIYLLAKRVAPAHEGLELGIGETSIIKALAEATGRTESKIKKLYQKVGDLGKVAKECRSSQSMMRKPEALTIRKVFNTFRLIAKESGRDSQMKKKNHIKALLVSATDCEPQYLIRFLQGKLRIGVAEQTLLAALGQAAVQSEEHSKPPAGIKSPLEEAVKIVKQVYSVLPVYDEIVSALLTHGVWKLPSTCNFTPGIPVGPMLSKPRKGISDILNSLQDVQFTCEYKYDGERAQVHYMENGSVEIYSRNAERNTGKFPDVVAAISRLKKSTVSSFVLDCEIVGYNREKQTIRPFQDLTTRPRKNVSVDNIKVDVCIFAFDILYLNGRVLLQDNLKIRREHLYASFEEETGVFQYATAITSNDTEEIQKFLDKAVGSSCEGLIIKTLNEDSTYEPSNRSNNWLKLKKDYLDNIGDSIDLVPIAAFHGRGKRTGVYGAFLLACYDYNNEEFQSICKIVGTGFTEEVLEERSKSLGSQVIPGPKRYYRYGDKMKPDVWFEASEVWEVKAADLTISPVHRAAVGIVDSDKGISLRFPRLVRVRPDKTPEQASSSEQVAEMYNVQKATQTKEKEKEKETTKQDGSESPKKTDLQ 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00499 743 MobiDBLite consensus disorder prediction 1 94 - -
Aip05g00499 743 CDD Adenylation_DNA_ligase_I_Euk 344 562 - -
Aip05g00499 743 TIGRFAM dnl1: DNA ligase I, ATP-dependent (dnl1) 171 711 IPR000977 GO:0003910|GO:0005524|GO:0071897
Aip05g00499 743 MobiDBLite consensus disorder prediction 25 61 - -
Aip05g00499 743 MobiDBLite consensus disorder prediction 694 743 - -
Aip05g00499 743 Gene3D DNA ligase/mRNA capping enzyme 384 509 - -
Aip05g00499 743 Pfam ATP dependent DNA ligase C terminal region 584 696 IPR012309 GO:0003910|GO:0006281|GO:0006310
Aip05g00499 743 SUPERFAMILY Nucleic acid-binding proteins 567 714 IPR012340 -
Aip05g00499 743 ProSitePatterns ATP-dependent DNA ligase signature 2. 533 559 IPR016059 GO:0003909
Aip05g00499 743 ProSiteProfiles ATP-dependent DNA ligase family profile. 461 597 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aip05g00499 743 PANTHER DNA LIGASE 1/3 FAMILY MEMBER 20 727 - -
Aip05g00499 743 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 347 565 - -
Aip05g00499 743 ProSitePatterns ATP-dependent DNA ligase AMP-binding site. 379 387 IPR016059 GO:0003909
Aip05g00499 743 PANTHER DNA LIGASE 1 20 727 - -
Aip05g00499 743 MobiDBLite consensus disorder prediction 71 85 - -
Aip05g00499 743 SUPERFAMILY ATP-dependent DNA ligase DNA-binding domain 95 345 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip05g00499 743 Pfam DNA ligase N terminus 113 288 IPR012308 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip05g00499 743 Gene3D - 564 728 IPR012340 -
Aip05g00499 743 MobiDBLite consensus disorder prediction 716 743 - -
Aip05g00499 743 Pfam ATP dependent DNA ligase domain 355 559 IPR012310 GO:0003910|GO:0005524|GO:0006281|GO:0006310
Aip05g00499 743 CDD OBF_DNA_ligase_I 567 712 - -
Aip05g00499 743 Gene3D - 89 357 IPR036599 GO:0003677|GO:0003910|GO:0006281|GO:0006310
Aip05g00499 743 MobiDBLite consensus disorder prediction 697 715 - -
Aip05g00499 743 Gene3D - 365 563 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00499 Aip-Chr5 5707781 5713939 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00499 5 715 Core DNA Replication Machinery Family AT1G08130 64.295 0.0 970
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00499 K10747 - aip:107642653 1389.4