Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00498 ATGGCTGGTTTGGATTTAGGAACAGCTTCACGCTTCGTTCAAAACCTGCACAGACCAGAATTTAACCTGCATCACAACCATCATCATCATCAACATCATCATCATCATCACCAACAAGATTCTGAAGAAGACGCCAACAACAACCACCAAGATCACTATGAGGATGATGCTCCCCACAACCACACGGGTTTGGACCTCGCATCGGCCTCCGCGGGGGACGTCGGCGCACGCCGTCCTAGGGGTAGGCCGCCGGGATCCAAGAACAAGCCCAAGCCGCCGGTCATCATAACCAGGGAGAGCGCCAACACGCTCAGAGCACACATCCTCGAGGTAGCCAGCGGCTGCGACGTCTTTGACAGCGTCGCCACCTACGCCCGCCGTCGCCAGCGCGGGATCTGCATCCTCAGCGGCAGCGGCACCGTCAATAACGTCACCATCAGGCAGCCAGCGGCCGCCGGAGCAGTAGTCACGCTCCACGGCAGGTTCGAGATATTGTCCCTCTCCGGCTCGTTCCTTCCGCCGCCGGCTCCCCCCGGCGCCACCAGCTTAAGCATATACCTCGCCGGAGGTCAGGGTCAGGTGGTCGGAGGGAGTAGGTTGCCTTTGGACGAAGATGAACAGCAGCTTCCAGGTGGCGGCGGCGGTCAGGGTTCCGGTGGTGGTGGTAATAGTCCGTTTGGTGACCCGTCCTCAGGGCTTCCTTTCTTTAATTTGCCGGTGAATATGCCGAATAATGTTCAGTTGCCATCAGCAGTGGATGGGTTTTCGCGTCCACCACCACCACCACCACCACCATTTTAA 801 0.583 MAGLDLGTASRFVQNLHRPEFNLHHNHHHHQHHHHHHQQDSEEDANNNHQDHYEDDAPHNHTGLDLASASAGDVGARRPRGRPPGSKNKPKPPVIITRESANTLRAHILEVASGCDVFDSVATYARRRQRGICILSGSGTVNNVTIRQPAAAGAVVTLHGRFEILSLSGSFLPPPAPPGATSLSIYLAGGQGQVVGGSRLPLDEDEQQLPGGGGGQGSGGGGNSPFGDPSSGLPFFNLPVNMPNNVQLPSAVDGFSRPPPPPPPPF 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00498 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 1 198 - -
Aip05g00498 266 CDD DUF296 105 188 IPR005175 -
Aip05g00498 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 23 199 251 - -
Aip05g00498 266 SUPERFAMILY AF0104/ALDC/Ptd012-like 101 198 - -
Aip05g00498 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 199 251 IPR014476 GO:0003680
Aip05g00498 266 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 15 1 198 IPR014476 GO:0003680
Aip05g00498 266 ProSiteProfiles PPC domain profile profile. 101 239 IPR005175 -
Aip05g00498 266 Pfam Plants and Prokaryotes Conserved (PCC) domain 105 198 IPR005175 -
Aip05g00498 266 MobiDBLite consensus disorder prediction 196 266 - -
Aip05g00498 266 MobiDBLite consensus disorder prediction 26 94 - -
Aip05g00498 266 MobiDBLite consensus disorder prediction 237 251 - -
Aip05g00498 266 MobiDBLite consensus disorder prediction 36 61 - -
Aip05g00498 266 Gene3D - 104 202 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00498 Aip-Chr5 5657600 5658925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00498 1 255 AT-hook Motif Nuclear Localized (AHL) Family AT4G17800 56.291 2.79e-79 239
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00498 - - qsu:111992217 313.923
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00498 05 5657600 5658925 Aip01g01208 01 31291003 31292178 PCT