Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00496 ATGGATTCTCGGGAACCCCACCACCAACCTTCCCATCACCACCACCCTCACCACCACCACCACCAACAACAACCACCTCCTCCCAACATGATGGTCGGCATGGGACCCACCCAATACCCTCCCTCCATGATGGCTCCCACCACCGCCCGATTTCCCTTTACCTCCGTCGTCCACCACCAGCATCAGCAGCACCAGCAACAACAGCAGCAGCAACAGCAGCAGCACCACCAGCACCAGCACCAGCACCAGCAGCCGCCCGTTCCACCAACCAACAACAACGGCAACGCCGCTAACGATAACAACAACACCGTCGCGCTTTACGACGGTTCCTCTTCCGCCCTTAAGCCCTGCGGATTCCCCACCACCGACTCCGCCTCCGCCGCCAAGAAGAAGAGGGGCCGACCCCGGAAGTACTCCCCAGACGGCAACATTGCCTTGGGACTCTCTACCACCCACGCCTCTCCCTCTCCCGCAGCACCACCACGCGCCGATTCCTCTGCCGGAGGTTCTGGTGGCGGTGGCGCAACCCCCTCATCGGAGCCTCTGGCCAAGAAGCACAGAGGGAGGCCTCCTGGCTCCGGCAAGAAGCAGATGGATGCGCTTGGAGCTGGTGGGATAGGTTTTACTCCGCACGTGATCTTGGTGGAGTCTGGTGAGGATGTTGCAGCTAAAATTATGGCCTTCTGCCAGCAAGGACCTCGGACTGTAGTCATTCTTTCGGCTAATGGTGCAATCTGTAATGTCACCCTTAAGCAGCCGACAACGTTGGGGGGTACTGTGACATACGAGGGCCGATTTGAGATTATATCTCTGTCAGGTTCTTTACTACATTCTGAAAATAATAGTGATCGAAGCAGACCGGGCGGCTTGAATGTCTCCCTTGCAGGTTCCGATGGACGAGTTTTAGGGGGTGGAGTTGCTGGAACGCTAACTGCAGCATCACCAGTACAGGTCATTGTGGGTAGCTTTATTGAAGATGGCAAAAAGTCAAATAGCTCAAGTAACAATAAATCAGGGCCTTCGTCAACGCCATCAACCCAAATGCTAAATTTTGGCGCTCCTATGACTCCAACCAGTCCTACCTCTCAGGGGGCTTCCTCGGAATCATCTGACGATAATGATCAGAGTCCTCCTAATAGGGGGCCTGGACTCTACAATAATGCTAGTCAGCCCATTCATAATATGTCGATGTACCATCATCAACTATGGGCTGGCCAAACTCAGCAGTGA 1230 0.5496 MDSREPHHQPSHHHHPHHHHHQQQPPPPNMMVGMGPTQYPPSMMAPTTARFPFTSVVHHQHQQHQQQQQQQQQQHHQHQHQHQQPPVPPTNNNGNAANDNNNTVALYDGSSSALKPCGFPTTDSASAAKKKRGRPRKYSPDGNIALGLSTTHASPSPAAPPRADSSAGGSGGGGATPSSEPLAKKHRGRPPGSGKKQMDALGAGGIGFTPHVILVESGEDVAAKIMAFCQQGPRTVVILSANGAICNVTLKQPTTLGGTVTYEGRFEIISLSGSLLHSENNSDRSRPGGLNVSLAGSDGRVLGGGVAGTLTAASPVQVIVGSFIEDGKKSNSSSNNKSGPSSTPSTQMLNFGAPMTPTSPTSQGASSESSDDNDQSPPNRGPGLYNNASQPIHNMSMYHHQLWAGQTQQ 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00496 409 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 13-LIKE ISOFORM X1 61 404 - -
Aip05g00496 409 CDD DUF296 209 323 IPR005175 -
Aip05g00496 409 MobiDBLite consensus disorder prediction 53 119 - -
Aip05g00496 409 MobiDBLite consensus disorder prediction 1 201 - -
Aip05g00496 409 Pfam Plants and Prokaryotes Conserved (PCC) domain 210 324 IPR005175 -
Aip05g00496 409 SUPERFAMILY AF0104/ALDC/Ptd012-like 208 325 - -
Aip05g00496 409 Gene3D - 210 337 - -
Aip05g00496 409 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 61 404 IPR039605 GO:0003680
Aip05g00496 409 ProSiteProfiles PPC domain profile profile. 204 346 IPR005175 -
Aip05g00496 409 MobiDBLite consensus disorder prediction 326 390 - -
Aip05g00496 409 SMART AT_hook_2 129 141 IPR017956 GO:0003677
Aip05g00496 409 SMART AT_hook_2 184 196 IPR017956 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00496 Aip-Chr5 5646281 5650063 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00496 128 409 AT-hook Motif Nuclear Localized (AHL) Family AT4G17950 49.367 1.69e-72 232
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00496 - - ahf:112748027 389.423