Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00494 ATGCCACCAGTTCCACTTGCTCCCTACCCAACACCCTCGGTTCCATATACTACGCCTCCATCAAATGTAGGTGGACAGAGTCAACTTGTGTGTTCCGGTTGCAGAAACCTACTGATGTATCCAGTTGGAGCCACGTCAGTATGTTGTGCAGTTTGCAATGCAGTCACAGCAGTGCCACCACCCGGCACAGAAATGGCCCAGTTAATTTGTGGAGGATGTCACACTTTACTGATGTACATCCGCGGAGCGACAAGTGTACAATGCTCTTGTTGCCACACCGTCAATCTAGCACTGGAAGCAAATCAAGTGGCGCATGTTAATTGTGGCAACTGTAGGATGTTGCTGATGTACCAATATGGAGCAAGATCCGTGAAATGTGCGGTCTGCAGTTTTGTAACCTCTGTTGGGGACTCATCAACAAGCACCACAGAGCAGAAATTCAGCACTTGA 450 0.4867 MPPVPLAPYPTPSVPYTTPPSNVGGQSQLVCSGCRNLLMYPVGATSVCCAVCNAVTAVPPPGTEMAQLICGGCHTLLMYIRGATSVQCSCCHTVNLALEANQVAHVNCGNCRMLLMYQYGARSVKCAVCSFVTSVGDSSTSTTEQKFST 149
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00494 149 PANTHER PROTEIN LOL1 3 145 - -
Aip05g00494 149 PANTHER PROTEIN LSD1 3 145 IPR040319 -
Aip05g00494 149 Pfam LSD1 zinc finger 70 94 IPR005735 -
Aip05g00494 149 Pfam LSD1 zinc finger 108 132 IPR005735 -
Aip05g00494 149 Pfam LSD1 zinc finger 31 55 IPR005735 -
Aip05g00494 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 28 58 IPR005735 -
Aip05g00494 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 67 96 IPR005735 -
Aip05g00494 149 TIGRFAM LSD1: zinc finger domain, LSD1 subclass 105 134 IPR005735 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00494 Aip-Chr5 5631499 5633126 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-LSD Aip05g00494 zf-LSD1 8.9e-12 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00494 - - mnt:21406053 258.455
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00494 05 5631499 5633126 Aip01g01215 01 32374069 32376595 PCT