Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00493 ATGAGGGCCAAAGACAAGCACACCCGAACCAATCGCAAACCTCGATCCTCGCCCAATCCTAATTCCAATTCAGATTCTTGCCGTAATAAAACGGTGGCCACGCCCAATTCCAACCGAAACCCTAACATACCTCCCTACAGCTGGGGTTTCTGCACCGAAGACGAGCTCCAAGAGCTTCTCTTGAGGAACATGGAGATCGTCTACGCCGACGTCGTTTCCAAGATCGTGTCCATGGGCTACAGCGAGGACCAAGCTCTCAAGGCGGTCCTCAACAATGGCCATTGTTTCGGTGGCGTCGATGCGCTGGAGAACATACTCAACAATTCCTTGGCTTATCTCAAAAGCAACGGCAATTTGGAGGGTAGCGATGACACTATGCCTGTTTTCACCGATTTGATGCAGTTGGAGGCGTATTCTCTTGCTGCTATGGTGTGTCTCTTGCAGCAGTTGAGGCCCAATTTGACTAAGGGTGATGCATTGTGGTGTTTGCTAGTCACTGATTTTCATGTCGGAAAGGCTAGCACAATTCAGGTTCCGGTTGCAAACAATGAATGTACTTGTTGTTCTTCGCGTACTGCTACTACTACTACTACTACTACTACTACTACCACCAACACTGGTGACAATGCAGTTGGTGTTGTGTCTCCATCTTGTGAGTCTCGAGGGGGACCTCCGGATTTTAATTTGGTCTTCGCTTGCGGCCATGAGATGAGTTTGCGGTTGCAGAGAGATATTGAATTCCCAAAAAGGTTTAATCTTTCTCCTTCGATGAAGTCCTTGTTGAAAAGAAATGTTGCATTGTGCGCTGCTGGTTTTAAGGCTCACTCAAAACAGTTGCCGCAGCCACAAGCCGTGGCCATTCCCGCTGGTAGCACTGGCCCGGCAGAGGATGCTGTTACCTCCATGATGAATAAATTTCGCGAGCTAAATCTCGATGATTGTATGAAGCTTCTTGCAGAGGATCAGAAGGATGAGGTGTTACTTGCTCTGTTTAATCAGGTTAAGGATCTCGAGAAAGAGCTCAAGGTCCGAAAGGATTGGGCTCATGAGAGGGCAGTGCAAGCAGCTACAAAGCTGAGCAATGATATGGCTGAGTTGAAAATGTTGAGGATGGAAAGCCAAAGAGAGGAGGCTCAGAAGTTAAAGAAAGGCAAGCAGGCGCTTGACGACGCGACAATGAAGAAACTATTAGAGATGGAGGAGGCCTTGAGGAAGACTAGTGGTGAAGTTGATCAGGCAAATTCAACTGTCAAAAAGTTAGAGACGGAGAATGCAGAAATTAGAGCAGAGTTGGAGGCTTCTAAATTGAGTGCATCAGAGTCTGTCAAAAACTGTACACAGGTTGAGAAAAGGGAGAAAAAGTGTTTAAAGAGGCTTCTTGCTTGGGAAAAACAGATAGCAAAGCTACAACAGGAGATTTCAGATGAAAAACAGAAGATAGTGGAGATTGAAGAAGAATTGGCTCGGATTAGACAGTGTCAGAAAGAAGCTGAGGTCAAGGTCAGGGAAGAGTTGAAGGCTAAAGAGGAAGCCCTGGTACTAATTGAGGAGGAACGCCGTAGCAAGGAAGCATCCGAGGCTGACAGTAAGAGAAATCTCAAGGCTTTACGCCTGAAGATAGAGATAGATTTCCAACGTCGCAAGGATGATCTCCTGAGGCTCGAGCAGGAGCTTTCATGCCTTAAAGTATCTTCTCGATCTGCTGATAAGCATCGGAAATCAAAAGCTTCACGGACAGGCAATTCTGATGTTGCAAAGCCCCAAAGGGAGACAATCACAAAGCTTCTTAAAGAATTAGACAATCTTGAGAATTTTGAAGAAGTCAACGGTGCTAGAGAATGTATCATATGCAAGGGAGACGAAGTTTCAATTGTTTTCTTACCGTGTGCACACCAAATTATGTGTGGTAGCTGCAGCCAGGAGTATGGGAGGAAGGGCAAAGCTACCTGTCCCTGCTGCCGGGTTCCAATTGAACAGAGAATCCGTGTGTTCGGTGCAGGTTCTTAA 2007 0.4649 MRAKDKHTRTNRKPRSSPNPNSNSDSCRNKTVATPNSNRNPNIPPYSWGFCTEDELQELLLRNMEIVYADVVSKIVSMGYSEDQALKAVLNNGHCFGGVDALENILNNSLAYLKSNGNLEGSDDTMPVFTDLMQLEAYSLAAMVCLLQQLRPNLTKGDALWCLLVTDFHVGKASTIQVPVANNECTCCSSRTATTTTTTTTTTTNTGDNAVGVVSPSCESRGGPPDFNLVFACGHEMSLRLQRDIEFPKRFNLSPSMKSLLKRNVALCAAGFKAHSKQLPQPQAVAIPAGSTGPAEDAVTSMMNKFRELNLDDCMKLLAEDQKDEVLLALFNQVKDLEKELKVRKDWAHERAVQAATKLSNDMAELKMLRMESQREEAQKLKKGKQALDDATMKKLLEMEEALRKTSGEVDQANSTVKKLETENAEIRAELEASKLSASESVKNCTQVEKREKKCLKRLLAWEKQIAKLQQEISDEKQKIVEIEEELARIRQCQKEAEVKVREELKAKEEALVLIEEERRSKEASEADSKRNLKALRLKIEIDFQRRKDDLLRLEQELSCLKVSSRSADKHRKSKASRTGNSDVAKPQRETITKLLKELDNLENFEEVNGARECIICKGDEVSIVFLPCAHQIMCGSCSQEYGRKGKATCPCCRVPIEQRIRVFGAGS 668
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00493 668 ProSiteProfiles Zinc finger RING-type profile. 614 654 IPR001841 -
Aip05g00493 668 SUPERFAMILY RING/U-box 595 660 - -
Aip05g00493 668 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 597 665 IPR013083 -
Aip05g00493 668 Pfam Family of unknown function (DUF6592) 64 173 IPR046527 -
Aip05g00493 668 Pfam Zinc finger, C3HC4 type (RING finger) 612 659 - -
Aip05g00493 668 Coils Coil 396 437 - -
Aip05g00493 668 Coils Coil 356 391 - -
Aip05g00493 668 Coils Coil 452 525 - -
Aip05g00493 668 PANTHER OS05G0141500 PROTEIN 2 666 IPR046934 -
Aip05g00493 668 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 2 666 - -
Aip05g00493 668 MobiDBLite consensus disorder prediction 1 44 - -
Aip05g00493 668 MobiDBLite consensus disorder prediction 14 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00493 Aip-Chr5 5602287 5605344 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00493 - - adu:107487583 1203.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00493 05 5602287 5605344 Aip01g01219 01 33090155 33096632 PCT