Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00477 ATGGTTTGCACTGCCAATGATTTACATGGTTGGAAGGACTTTCCAAAGGGTCTTAGGGTTCTTCTCCTTGAAAGAGACAGCACTTCTGCTTCTGAGATAAGAGCCAAACTTGAGGCCATGGACTATCACGTTTCTACCTTCTACGATGAGAATGAAGCATTGTCAGAAATTTCAAATAGGCTCGAAGGATTCCATGTTGCCATTGTGGAGGTGAGTACAAGTAGCAGCCAGAGAGGCTTTAAATTTCTTGAGAATGCCAAGGACTTGCCAACCATCATGACTTCAGATACTCAGTGCTTGAGCACTATGATGAAGTGCATTGCGCTTGGTGCTGTTGAGTTCCTATGTAAACCACTCTCTGAGGACAAACTCAGAAATATTTGGCAGCATGTGGTTCATAAGGCATTCAATGCTGGGGCAAGTGTCTTGTCCGAATCACTAAAACCGGTTAAAGAGTCTGTAGAATCCATATTGCAGCTGCAAACAGAAAATGGACATCATGAGAGTAAAATTTCCATTGATTTAGAGAATATATCAAGGTTTAGTGATAATTACCATGAGCAGTCTGCCGGAAGTGATAAATATCCGGCTCCTTCGACACCTCAATTAAAACAGGGAGCAAGGTTACTGGATGATGGTGATTGCCAAGAGCATACAAATTGCTCGAATGAAAAAGAAAGTGGGGAACATGAAGGGGAATCTAAATCTGTTGAAGCATCAAGTGAGAATTTGAATGAAGGTACTCAACCACAGAAACCTGAAGAGACTCTAATTAAACAGGAAGAGGATTTTGTTGCTGATGGTTCCAATGGTGAAAGTACTGTTCCTTTGAATCCTCATGATAGAAGGTCTCTCAGAAGCACCAATGGAAATATAACATCTCCAAATAAAGCAGTGGTCCTTAGTGATACATGTCAAAACAAAGCTAACCGGAAGAAGTTGAAAGTAGACTGGACTCCTGCATTGCACAAAAAGTTTGTGCAGGCAGTGGAACAACTAGGTATTGATCAAGCCATTCCTTCTCGCGTACTGGAGCTGATGAAAGTGGAGGGCTTGACTAGGCATAATGTGGCAAGCCATCTTCAGAAATACAGACTACATAAGAGACAAATGATGCCCAAGGAAGATCGAAGATGGCAAAATCAAAGAGATACCGTGCGCTGGAAAAGGCCAGTTATGGCCTATCCTCCTGTATATCCAATGTGGGGACAATCCGGAACTCAAACAACCGGTGCACAGTTTTGGGGACCTCCTGGTTATACCTGGTTGCGGCCTACAGAAAATTGGCACTGGAAGCCTTTTCCAGGGGTGCATGTGGATGCATGGGGTTGTCCAGTGTTGCCAGCTACTCAAGCTCCTTACCTTTCTTACACTCAACATATGGCTGGATTGCACAATGGTAAATCAGCGGATTATAGATATGGCATGCCACCAAGTTCATTTGAGCATTATCCGGCAGATGAAGTTGTTGACAAAGTTGTAAAGGAAGCAATAAGCAAGCCGTGGCTACCGTTACCCTTGGGCCTCAAGCCTCCTTCCACGGACAGCGTGTTGGCCGAGCTCTCCAGGCAAGGCATATCCCCCATCCCTCTTGACTCCAAGGGCTCTAAACCCTGCTGA 1620 0.4444 MVCTANDLHGWKDFPKGLRVLLLERDSTSASEIRAKLEAMDYHVSTFYDENEALSEISNRLEGFHVAIVEVSTSSSQRGFKFLENAKDLPTIMTSDTQCLSTMMKCIALGAVEFLCKPLSEDKLRNIWQHVVHKAFNAGASVLSESLKPVKESVESILQLQTENGHHESKISIDLENISRFSDNYHEQSAGSDKYPAPSTPQLKQGARLLDDGDCQEHTNCSNEKESGEHEGESKSVEASSENLNEGTQPQKPEETLIKQEEDFVADGSNGESTVPLNPHDRRSLRSTNGNITSPNKAVVLSDTCQNKANRKKLKVDWTPALHKKFVQAVEQLGIDQAIPSRVLELMKVEGLTRHNVASHLQKYRLHKRQMMPKEDRRWQNQRDTVRWKRPVMAYPPVYPMWGQSGTQTTGAQFWGPPGYTWLRPTENWHWKPFPGVHVDAWGCPVLPATQAPYLSYTQHMAGLHNGKSADYRYGMPPSSFEHYPADEVVDKVVKEAISKPWLPLPLGLKPPSTDSVLAELSRQGISPIPLDSKGSKPC 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00477 539 Gene3D - 309 371 - -
Aip05g00477 539 MobiDBLite consensus disorder prediction 185 255 - -
Aip05g00477 539 SUPERFAMILY Homeodomain-like 312 370 IPR009057 -
Aip05g00477 539 MobiDBLite consensus disorder prediction 271 295 - -
Aip05g00477 539 Pfam Myb-like DNA-binding domain 316 365 IPR001005 -
Aip05g00477 539 MobiDBLite consensus disorder prediction 238 254 - -
Aip05g00477 539 PANTHER TRANSCRIPTION ACTIVATOR GLK1 1 537 IPR044825 GO:0003700|GO:0045893
Aip05g00477 539 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 313 368 IPR006447 GO:0003677
Aip05g00477 539 ProSiteProfiles Response regulatory domain profile. 19 132 IPR001789 GO:0000160
Aip05g00477 539 MobiDBLite consensus disorder prediction 267 295 - -
Aip05g00477 539 Gene3D - 15 135 - -
Aip05g00477 539 SUPERFAMILY CheY-like 16 134 IPR011006 -
Aip05g00477 539 PANTHER TWO-COMPONENT RESPONSE REGULATOR-APRR2-LIKE PROTEIN 1 537 - -
Aip05g00477 539 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 310 369 IPR017930 -
Aip05g00477 539 MobiDBLite consensus disorder prediction 210 237 - -
Aip05g00477 539 MobiDBLite consensus disorder prediction 185 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00477 Aip-Chr5 5384435 5388648 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00477 1 533 Response Regulator Gene Family AT4G18020 49.474 6.73e-144 423
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Aip05g00477 Myb_DNA-binding 3e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00477 - - gmx:100784905 786.563
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00477 05 5384435 5388648 Aip01g01248 01 34428024 34434555 PCT