Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00468 ATGGCGCTCCATATTTTGTGTGGATTTTTTCTTACCACCTTTGTTTTCATGCAAACACTGGCAGATACTTCTTCATCGTGCACCGATTGCTTTGTAAATTCAAGGGCAACATATTACCCCCATTCTGAACAAAATGGGACAGCCAACGGTGCATGCGGCTTTGGTTCCTTTGGTGCTATGGTGAACGGCGGCGACGTATCTGCCGCATCTAGTCTTTATCGAAATGGCGTTGGATGTGGCGCCTGTTACCAGGTGAGGTGTACGGACGGTGGTTATTGCTCAGATAACGGTGTGACAGTGGTTATAACAGACGAAGGGTCAAGTGATAACACTGATTTCATTCTCAGCGAACATGCCTTTGATCGGATGGCTCAGACCACTGATGCAGCTGCTTATCTCTTAGCCCTTGGCGTTCTTGATATTCAGTATACACGGGTTGCATGCAATTATCCACACGAGAACATAACATTCAAGATAGATGAGAGTAGCAGCAACTCTAATTACTTGGCATTTGTGATTTGGTATCAACAGGGAATTAGAGACATAACTGCTGTCCAGCTTTGTGAGACTGAGAACTTTGAGTGCAAGCTGCTAGATCGGAGCCATGGTGCAGTGTGGACTAGCTCCTCTCCTCCAAGTGGACCATTGTCTATAAGGATGTTGTTTAGTGATGAAGATGAACAAAATGAAGAATGGGTTGTTCCTCCTAATAACTTACCCGCAGATTGGAAGCCTGGTCAAATATATGACTCTGGGATACAAGTTAACTTTTAA 774 0.4457 MALHILCGFFLTTFVFMQTLADTSSSCTDCFVNSRATYYPHSEQNGTANGACGFGSFGAMVNGGDVSAASSLYRNGVGCGACYQVRCTDGGYCSDNGVTVVITDEGSSDNTDFILSEHAFDRMAQTTDAAAYLLALGVLDIQYTRVACNYPHENITFKIDESSSNSNYLAFVIWYQQGIRDITAVQLCETENFECKLLDRSHGAVWTSSSPPSGPLSIRMLFSDEDEQNEEWVVPPNNLPADWKPGQIYDSGIQVNF 257
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00468 257 PANTHER EXPANSIN-B3 8 256 - -
Aip05g00468 257 PRINTS Expansin/Lol pI family signature 30 45 IPR007118 GO:0005576
Aip05g00468 257 PRINTS Expansin/Lol pI family signature 69 87 IPR007118 GO:0005576
Aip05g00468 257 PRINTS Expansin/Lol pI family signature 136 152 IPR007118 GO:0005576
Aip05g00468 257 PRINTS Expansin/Lol pI family signature 237 251 IPR007118 GO:0005576
Aip05g00468 257 ProSiteProfiles Expansin, family-45 endoglucanase-like domain profile. 49 153 IPR007112 -
Aip05g00468 257 Pfam Expansin C-terminal domain 155 228 IPR007117 -
Aip05g00468 257 Pfam Lytic transglycolase 69 143 IPR009009 -
Aip05g00468 257 Gene3D - 15 148 IPR036908 -
Aip05g00468 257 Gene3D - 149 252 IPR036749 -
Aip05g00468 257 ProSiteProfiles Expansin, Cellulose-binding-like domain profile. 167 251 IPR007117 -
Aip05g00468 257 SUPERFAMILY Barwin-like endoglucanases 25 152 IPR036908 -
Aip05g00468 257 SUPERFAMILY PHL pollen allergen 154 251 IPR036749 -
Aip05g00468 257 PANTHER EXPANSIN-LIKE B1 8 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00468 Aip-Chr5 5328118 5330311 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00468 4 253 Expansin Gene Family AT4G17030 41.833 6.35e-62 193
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00468 - - ccaj:109799868 424.476
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00468 05 5328118 5330311 Aip05g00468 05 5328118 5330311 ECH
Aip05g00468 05 5328118 5330311 Aip01g01257 01 35003848 35005851 PCT