Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00451 ATGCATTCCAACACTGTTCCTGTTGCCTCCAGAACTCGTTCCAGAACCCCCGCCACAACCACCATGAGCCTTAGTAGCTCCGACGATGACGAAGTCGTCGTTAAAGGGGAAACTCCCCCGAAACCTCAACCTGAACGCGGCAGCACAGAAGAAGAAGAAGAAGGCAGCGGTAACAGAGACAGCGAGAATGTGAAGGAGGGCGAGAACAGAGAAGATATAACGAGGAAAAGAAGAAAATTTGGGGTTGACATTTTGATTGACCAGAGTCTCAGCCCCGATGGTAAGAGTGTTGCACACAGGACTCGTTCCCATTTCCCGAAGAGCAAGAAGAACCTCCTTTTTGGGACTTTTAGTCAACCAATTTGCCTTGCTGATGATGATGAAGAACAAGAACAAGAACAAGAACAAGAAAAGGAAGAAGGGCAACAACCTGGGAAGCAAGGTGAAGATGATGAAGAAGAACATGTGGAGGAGGAGGAGGAGGACGAGGAGGAGGAGGAGGGGGAGGAGGACGAAGACGACGACGACGAGTCTCTTTATGAATCAGAAGAAACTGATTTGGAGGAGGAGGATGATGATGATGACGACGACTACAGCGTAGAGAGGGATGCATGTATGAACAATGTGGCCAATTTTGAAGGGAAGAAGCAAAAGCGGAAGCGTGTTGATGTGGCTAGCATGTTAAGGGATATGATGTTTGGCAAGGGAGAGGTGCCTCTGCTGGAGTCTGTGGAAGAAGAATCAGGTGCAACTGTGGTGACCATGGACGTGCCAACAAGGTCCCCTTTCAACAGTGAGAAGCACGCGCCACCGGAGAAATCGACTGACCAGGAGGAAGTGTTGGATGCTATTTGGGCTGAGATGGAGCGTGGCTTCAGCTCTGATCCTGTTGAAGAGGGACATGGTTCTAATGAATTCAAATGCAGAGGTTCCAAGAGGGAAAAGGGATCTGCTTTTGAATTCACAAGGAAGATAGAAGATCAAGATCTTGGTGGGGAGTTTCAGGATTGTGTTGCCCAAGAGAAGGGTAAATTGTCTAGCAAGTCAAGCATTGAGGAGGGAAATTCATGTGTGGATTTTCCTTTCAAGTTTACTTTTTTAACTAAGGAACTGCCAGCTGAGAAATCCCAAGATGAGAAAGAAATAGATAGGATCTGGTCTGAGATGGAGCTTGGTCTTCATGTTATCCAACAAGACTCTGCTTCTGCTCCTCAGCAGGGTGAAAATAATGCTGATCGTGATCAATTTCCGGTGGAAGGTGATGCTAACACACCCCCTTTTTTTCGCTGTCGAAAAGGGGAACACAATCTTGTTCTTGATGAGGAAATTGGGCTTATCTGTAAATATTGCTTGCATGTGGCACAGGAGATCAAGAATTGGGTTCCTCCTTTTGTTGAAAGTCCATGGGAAAAATCTGACAGGAGAGATTATTATTATTATGGGGATGATGTTGACCGGTCTGTCTTTGATGAGCTTCATGATCGAACTTCTTTGAGTGATGATTATAACCTTGGTAATCACAAGGGGACAGTGTGGGATATGATTCCTGGAGTGAAGAAGACTATGTATCCTCATCAATGCGAAGCTTTTGAATTTCTCTGGAGTCATTTAGCTGGTGGAATTTTTCTTGATCAGCTTAAAGGAGAAAACACTGGAAATGGATGCGTTGTATCTCATGCTCCTGGCACGGGGAAAACCCGTCTTGCTATTGTATTTATCCAGAGTTACATGAAGTTATATCCAGCATGCTCACCAATGATCATTGCTCCTAAAAGCATGCTCCTTACATGGGAAGAGGAGTTCAAAATATGGAAGGTTGACATTCCCTTTCACAATGTGAACAATTCTGAATACTCTGGCAACGAGAATGAAACAGCTCTTAATCTTATCAATAAATTTGGTCGAAATGCTTCGACTCAGGCAGCAAAGCGGAATTGTCGTACAGCTAAGTTTTATTCCTGGAAGCTTGGCAAAAGCATCTTGGGAATTAGCTACAAATTGTTCGAGCTACTTACCCGGGAGGGCTCCCGGGACAAGGTCATGAGGAAGTTCCTTCTTGAACAGCCTAGTTTGCTAGTTCTTGACGAAGGGCACACTCCCCGCAATAAGACATCTGCTGTATGGAAATCCGTCTCTGAAATTGAAACAAAGAGACGCATCATCCTTTCCGGAACTCCCTTTCAAAATAACTTTAGGGAGCTATACACCACACTGTGCTTGGCAAGGCCTAAATTTGCTGATTTGAATCCAAGAGATGAACATAGAGGGAGATGGCGATATCTTGTCAGTTCATATGGAAAGGTTACTGATACCAGTAGAAAATTAAAGATATTGAAAGAGATCCGAGAAATGATTCAACCTTTTGTTCATGTATACAAGGGAACCATACTGCAAGACAGTCTCCCAGGGTTGAGGCAGTTGGTAGTCATATTGAAGCCAACCCAGTTGCAGGAGAAATTGCTTCAAGATCTTAAGAAGAGATTTGATAATGTGCTTAAATTAGAATACGAAGAGTCTGTAGCAGCATTTCATCCTTCTCTTTGCGAGCTAGCTGAAGACAAGGAGAAGATACAAAAGTGTAGATTGAACCCCAACGAAAGTGCCAAAACAAAGTTCTTAATGGAACTTATCAGGATCAGTGGAATTTTCAATGAAAAAGTTTTGGTTTTTAGTCAATTCATTGAACCTTTGAAGCTTCTACTGAGCCAGCTGAAGCAGCATTTTAGTTGGACTGAAGGAAGAGAGGTGTTACAAATGCATGGAAAACAAGAAGCAAAGCTTCGTCAGGCTTCAATCCACACTTTCAATGATCCGAACAGCAAAGTAAAGGTAATGCTAGCATCAACCAAGGCTTGTTACGAAGGTATCAGTTTGGTAGGTGCCTCCAGGGTTGTTTTGCTTGATGTTGTGTGGAATCCCTCGGTTGAGAAGCAAGCAATAAGCCGTGCTTATAGGCTCGGCCAAAAGAAGCTTGTGTTTACTTACCATTTGATCACCAAGGGGACAACGGACGAGAAAAAATGTGGTCGACAAGCTGTGAAGGATCAGTTGTCAGAGTTGGTGTTCTTTCATACCGAAGGTGGGGCTCAAAATCGTCAACTCTTTTCATCCGCTTTGGAAGATGAAATTCTGGAGCAGATCATTGAGCAAGAAAAGTTCAGACACATAATTGAAAAAGTAGCTATTAAGAAACCAAATCTACTTTGA 3207 0.4375 MHSNTVPVASRTRSRTPATTTMSLSSSDDDEVVVKGETPPKPQPERGSTEEEEEGSGNRDSENVKEGENREDITRKRRKFGVDILIDQSLSPDGKSVAHRTRSHFPKSKKNLLFGTFSQPICLADDDEEQEQEQEQEKEEGQQPGKQGEDDEEEHVEEEEEDEEEEEGEEDEDDDDESLYESEETDLEEEDDDDDDDYSVERDACMNNVANFEGKKQKRKRVDVASMLRDMMFGKGEVPLLESVEEESGATVVTMDVPTRSPFNSEKHAPPEKSTDQEEVLDAIWAEMERGFSSDPVEEGHGSNEFKCRGSKREKGSAFEFTRKIEDQDLGGEFQDCVAQEKGKLSSKSSIEEGNSCVDFPFKFTFLTKELPAEKSQDEKEIDRIWSEMELGLHVIQQDSASAPQQGENNADRDQFPVEGDANTPPFFRCRKGEHNLVLDEEIGLICKYCLHVAQEIKNWVPPFVESPWEKSDRRDYYYYGDDVDRSVFDELHDRTSLSDDYNLGNHKGTVWDMIPGVKKTMYPHQCEAFEFLWSHLAGGIFLDQLKGENTGNGCVVSHAPGTGKTRLAIVFIQSYMKLYPACSPMIIAPKSMLLTWEEEFKIWKVDIPFHNVNNSEYSGNENETALNLINKFGRNASTQAAKRNCRTAKFYSWKLGKSILGISYKLFELLTREGSRDKVMRKFLLEQPSLLVLDEGHTPRNKTSAVWKSVSEIETKRRIILSGTPFQNNFRELYTTLCLARPKFADLNPRDEHRGRWRYLVSSYGKVTDTSRKLKILKEIREMIQPFVHVYKGTILQDSLPGLRQLVVILKPTQLQEKLLQDLKKRFDNVLKLEYEESVAAFHPSLCELAEDKEKIQKCRLNPNESAKTKFLMELIRISGIFNEKVLVFSQFIEPLKLLLSQLKQHFSWTEGREVLQMHGKQEAKLRQASIHTFNDPNSKVKVMLASTKACYEGISLVGASRVVLLDVVWNPSVEKQAISRAYRLGQKKLVFTYHLITKGTTDEKKCGRQAVKDQLSELVFFHTEGGAQNRQLFSSALEDEILEQIIEQEKFRHIIEKVAIKKPNLL 1068
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00451 1068 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 2-RELATED 4 1062 IPR044567 GO:0080188
Aip05g00451 1068 Gene3D - 500 789 IPR038718 -
Aip05g00451 1068 Pfam SNF2-related domain 539 850 IPR000330 GO:0005524|GO:0140658
Aip05g00451 1068 MobiDBLite consensus disorder prediction 1 202 - -
Aip05g00451 1068 Pfam Helicase conserved C-terminal domain 870 987 IPR001650 -
Aip05g00451 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 512 788 IPR027417 -
Aip05g00451 1068 MobiDBLite consensus disorder prediction 44 83 - -
Aip05g00451 1068 SMART helicmild6 898 987 IPR001650 -
Aip05g00451 1068 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 871 1043 IPR001650 -
Aip05g00451 1068 MobiDBLite consensus disorder prediction 1 28 - -
Aip05g00451 1068 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 546 744 IPR014001 -
Aip05g00451 1068 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 687 1022 IPR027417 -
Aip05g00451 1068 MobiDBLite consensus disorder prediction 151 200 - -
Aip05g00451 1068 Gene3D - 802 1064 IPR027417 -
Aip05g00451 1068 CDD SF2_C_SNF 867 998 - -
Aip05g00451 1068 MobiDBLite consensus disorder prediction 244 277 - -
Aip05g00451 1068 Coils Coil 146 169 - -
Aip05g00451 1068 PANTHER SNF2 DOMAIN-CONTAINING PROTEIN CLASSY 4 4 1062 - -
Aip05g00451 1068 SMART ultradead3 518 754 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00451 Aip-Chr5 5045678 5049555 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00451 863 1017 RAD5 or RAD16-like Gene Family AT5G43530 39.241 2.42e-17 85.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip05g00451 SNF2_N 1.3e-21 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00451 K10875 - vvi:100267731 689.108
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00451 05 5045678 5049555 Aip05g00451 05 5045678 5049555 ECH