Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00444 ATGGAGGAACGGTATGAGCCAATCAAGGACCTTGGTTCTGGAAATTTCGGAGTTGCTAGGTTGGCTAAAGACAAGAAAACAGGGGAGCTTGTTGCTGTTAAATACATTCAAAGGGGTAAAAAGATTGACGAGAATGTTCAAAGGGAGATAATTAACCACCGATCTCTAAGGCACCCTAACATTATCAGGTTCAAAGAGGTAATACTTTTTTTGCATTTGTATCTAAATTTCATTGCACGTGCAACAATGTTGAATGTAAGATCTTTCTTCTGCAAGGTGTTTCTCACTCCAACTCATTTAGCTATTGTTCTGGAATATGCTGCTGGTGGTGAACTCTTTGGGAGGATTTGCACAGCTGGTCGATTTAGCGAAGATGAGGCAAGATTTTTCTTCCAGCAACTCATATCTGGAGTTAGCTACTGTCATTCAATGCAAATTTGTCATAGAGATCTGAAACTGGAAAACACTCTCTTGGACGGTAATCCGGCACCTCGACTTAAGATTTGTGACTTCGGTTTCTCCAAGTCTGCATTGCTGCATTCGCAGCCTAAGTCAACAGTTGGAACACCAGCATATATTGCTCCAGAGGTTTTGTCTCGAAAGGAGTATGATGGAAAGATTGCAGATGTTTGGTCATGTGGGGTGACTCTGTATGTAATGTTAGTTGGAGCATACCCATTTGAAGATCCAGAAGATCCTAGAGACTTCAGAAAGACTATTGGGAGAATAATGAGCGTGCAGTATTCTATACCTGATTATGTGCGTCTTTCTTCAGAGTGTAGGCATCTTCTCACTTGCATTTTTGTTGCCAATCCAGCCAAGGCAAGTATTATATTAAGGATTACTATTCCGGAGATAAAACAGCACACATGGTTCTTGAAGAACTTGCCTAGAGAGATAATTGAGGCTGATAGAAGAATCAATCAAGAAAGTGGGAAGGAGGAGCCACCAAGCCAAAGTGTTGAAGAAATCATGCGTATAGTCAAAGAGGCAAGGAAACCATATCCAGGATTAAAATTGGATTCTGAAGTTGTTGAAGCTAAAGAGGAACTTAATGTTAATGGAGATTCTGTGAAACCTCTTTTATCCTTAAATTAA 1098 0.4026 MEERYEPIKDLGSGNFGVARLAKDKKTGELVAVKYIQRGKKIDENVQREIINHRSLRHPNIIRFKEVILFLHLYLNFIARATMLNVRSFFCKVFLTPTHLAIVLEYAAGGELFGRICTAGRFSEDEARFFFQQLISGVSYCHSMQICHRDLKLENTLLDGNPAPRLKICDFGFSKSALLHSQPKSTVGTPAYIAPEVLSRKEYDGKIADVWSCGVTLYVMLVGAYPFEDPEDPRDFRKTIGRIMSVQYSIPDYVRLSSECRHLLTCIFVANPAKASIILRITIPEIKQHTWFLKNLPREIIEADRRINQESGKEEPPSQSVEEIMRIVKEARKPYPGLKLDSEVVEAKEELNVNGDSVKPLLSLN 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00444 365 SMART serkin_6 5 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00444 365 Pfam Protein kinase domain 5 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00444 365 Gene3D Phosphorylase Kinase; domain 1 1 77 - -
Aip05g00444 365 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 3 70 - -
Aip05g00444 365 PANTHER SUCROSE NONFERMENTING 1(SNF1)-RELATED KINASE 90 333 - -
Aip05g00444 365 SUPERFAMILY Protein kinase-like (PK-like) 3 301 IPR011009 -
Aip05g00444 365 PANTHER SERINE/THREONINE KINASE 3 70 - -
Aip05g00444 365 PANTHER SERINE/THREONINE KINASE 90 333 - -
Aip05g00444 365 ProSiteProfiles Protein kinase domain profile. 5 292 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00444 365 CDD STKc_SnRK2 4 291 - -
Aip05g00444 365 Gene3D Transferase(Phosphotransferase) domain 1 107 299 - -
Aip05g00444 365 ProSitePatterns Protein kinases ATP-binding region signature. 11 34 IPR017441 GO:0005524
Aip05g00444 365 ProSitePatterns Serine/Threonine protein kinases active-site signature. 146 158 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00444 Aip-Chr5 5004518 5006334 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00444 4 302 CBL-interacting serine-threonine protein kinases AT4G24400 39.286 2.15e-60 198
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_OST1L Aip05g00444 Pkinase 4.8e-64 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00444 K14498 - gmx:547790 530.02
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00444 05 5004518 5006334 Aip05g00444 05 5004518 5006334 ECH
Aip05g00444 05 5004518 5006334 Aip01g01312 01 38533420 38537042 PCT