Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00434 ATGGATGTAGATAGCTTACAATTGAGCATTGCAACAGGTACACCACTTTGGCGCAATGGGCCACCGGAGAAGCCAGTGCTATGCAATGCGTGTGGATCTCGATGGAGAACAAAGGGAACACTTGCAAATTATACCCCTCTGCATGCTCGGGCAGAAGCTGATGATAGTGAGGATCAAAGGGTTTCCAGGGTAAAGATTATATCATTACATAAGAACAAAGAAATGAAATCTTTAAAACGAAAGCAGAACCATGATAGTGTTGTGGTATCTGGTGGCCTCACCCCTGATTACAAGTACAACCAAGGATTTGGAAAGGCTGTAGATGAAGATACAAGCAATCGTTCGAGTTCAGGATCAGCTATCTCTAACACAGAGAGTTGTGCTCAATTTGGTGGCACAGATGCTAGTGATTTGACAGGTCCTGCTCAGTCAGTGGTTTGGGAAGCCATGGTGCCTTCCAAAAAGAGGACTTGTGTGGGTCGTCCTAAGGCTTCTTCTGTTGAGAAGCTAACAAAAGACTTATGCACTATACTTCATGAGCAGCAATCTTATTTTTCTACATCTTCTGAAGAGGAACTTCTGTTTGAAAGTGAAACACCTATGGTCTCTGTTGAGATAGGACATGGAAGCGTTCTTATAAAACATCCTAGTTATGTAGCTCGCGAAGAGGTGTCTGAGGCTAGCGCTGTTTCAGTTGATAACAAACAATGCCTAGTGAGTGAAGCATATTCAGATTCTGGTCCCTTTCTTGTGTATAATGATTTGAATGGTATGAACTTCTCATCCTATGGAGTCGACAAGGTTGAGAATTCTGCTGACCAAGAAATGCAGGAGGAGCAACTTAAAAGTGACAAATCTCAGCTTGAGAGAGTACAAATACTTGGAGACCATAATTCCCCATTGTGCTCAATAGATTTAAATGATGTAGTAAACTACAAGGAGTTTGTGAGAAACATGACAAATGAAGACCAACAGCTATTGCTGAAGTTTCTTCCTATGGTTGATACTGCTAAACTTCCTGATAGCCTTAAAGTCATGTTCAATAGCTCTCAATTCAAGGAGAACTTGACTTATTTTCAGCAGCTTCTTGGGGAAGGTGTCTTCGATATCTCTTTCTTAGGGGCAAAACCTGAAGACTGCAAAACTTTGAAAAGGCTTGCATTATCCAATCTGTCAAAGTCAAAATGGGTAGAACATTATAGTTACCTGAAGAGATGTAAAACCACAGCTGCAAAATCTGTTAGTCAGGGATCAACTGGTAAAGCATCATCTAATTTTGCGAATGTGAAGAGATTGCGTGATGGCCGAAATCAAAACTCTCCAGAACTGAAGACCATGATGAGGAGCCCCAAAGGAATGACCATAAAGATTGGCAGTGAGGGAAATGAAGTTGTAGAAGATGGCTCTTGCTATAGTCCAAAAAGCCTGTTTGCTTTGCCTCCTGATGCTGCCTCGCTCTTGCAAGTTTCTTCGAACTTTGTTGAGGAGAGTTCTGATCATGATGTTTTGGTAGAGGTCCCATCTAATAGTTCATTCCCACAGGCAGAACTTCTGCACCCAACATCAAGCTTTGGTGCTCAAGCAAGCACAAGTAGTAGCTCAGTGTACTCACATTTTGTTCATAATTAA 1629 0.4174 MDVDSLQLSIATGTPLWRNGPPEKPVLCNACGSRWRTKGTLANYTPLHARAEADDSEDQRVSRVKIISLHKNKEMKSLKRKQNHDSVVVSGGLTPDYKYNQGFGKAVDEDTSNRSSSGSAISNTESCAQFGGTDASDLTGPAQSVVWEAMVPSKKRTCVGRPKASSVEKLTKDLCTILHEQQSYFSTSSEEELLFESETPMVSVEIGHGSVLIKHPSYVAREEVSEASAVSVDNKQCLVSEAYSDSGPFLVYNDLNGMNFSSYGVDKVENSADQEMQEEQLKSDKSQLERVQILGDHNSPLCSIDLNDVVNYKEFVRNMTNEDQQLLLKFLPMVDTAKLPDSLKVMFNSSQFKENLTYFQQLLGEGVFDISFLGAKPEDCKTLKRLALSNLSKSKWVEHYSYLKRCKTTAAKSVSQGSTGKASSNFANVKRLRDGRNQNSPELKTMMRSPKGMTIKIGSEGNEVVEDGSCYSPKSLFALPPDAASLLQVSSNFVEESSDHDVLVEVPSNSSFPQAELLHPTSSFGAQASTSSSSVYSHFVHN 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00434 542 SMART GATA_3 11 52 IPR000679 GO:0006355|GO:0043565
Aip05g00434 542 CDD ZnF_GATA 14 52 IPR000679 GO:0006355|GO:0043565
Aip05g00434 542 PANTHER OSJNBB0038F03.10 PROTEIN 12 541 IPR044589 -
Aip05g00434 542 PANTHER GATA TRANSCRIPTION FACTOR-LIKE PROTEIN 12 541 - -
Aip05g00434 542 Pfam GATA zinc finger 12 40 IPR000679 GO:0006355|GO:0043565
Aip05g00434 542 Pfam Asx homology domain 285 369 IPR028020 -
Aip05g00434 542 Gene3D - 10 86 IPR013088 GO:0006355|GO:0008270
Aip05g00434 542 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 12 44 - -
Aip05g00434 542 ProSiteProfiles DEUBAD (DEUBiquitinase ADaptor) domain profile. 297 409 IPR044867 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00434 11 519 C2C2-Gata Transcription Factor Family AT4G17570 50.772 7.33e-149 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Aip05g00434 ASXH 4e-08 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00434 - - gmx:100798504 753.436