Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00417 ATGTGCGAACAAAGCAGTTACGAGGCCGATTTGGCGCTACTGGACTCAATTCGTCGCCACTTGCTGGGAGAGTCCGACCCTTTTATATTCGGAGCACCGAATTGTAATTCGGGTAGCACACCGGTTTTCTGCAGGAGCTCCAGCTTCAGCAGCTTGTACCCTTGCCTGAGCGAAAATTGGGGCGAGTTGCCGCTCAAAGAAGACGATTCAGAAGATATGGTGCTCTACGGCGTTCTCCGCGACGCCGTAAACGTCGGTTGGGTCCCTTCTCTCGAAGCCGGATCACCCGAATCCTTCTCTTCGGGTTACTTACCCGACGTAACGGTTAAATCAGAGCCGGATGTATTGGTGCCAAGCTTGCCGGAGCCTGTCATCTCCGCCGTCGTAGCCCCGATTGAAGAGAAGCCTACGCCTGTTCCGGTTCCGGCGAAGGGGAAGCACTACCGCGGAGTGAGGCAGCGACCGTGGGGGAAGTTCGCGGCGGAGATTCGCGACCCGGCGAAAAACGGCGCTAGGGTTTGGCTCGGAACATTCGAAACCGCCGAAGACGCTGCTTTAGCTTACGACCGCGCCGCGTACAGAATGCGCGGGTCGCGAGCTCTGTTGAATTTCCCACTCCGGGTAAACTCCGGTGAACCCGACCCCGTGAGGGTGACGTCTAAGCGGTTGTCGCCGGAGCCTTCATCATCGTCGGATAGTGTCTCCACGACGAAGAGGAGGAAGAAGACGGTGGGACCGAGGGTACCGGTGGTGACAGGTCAGGTTGAGATGAAGACGGGGCAAGTGGGAAGTCAAGTGGCGCATTGTACACGTGGCGAGCAGTTATTGGTGAGCTGA 837 0.5759 MCEQSSYEADLALLDSIRRHLLGESDPFIFGAPNCNSGSTPVFCRSSSFSSLYPCLSENWGELPLKEDDSEDMVLYGVLRDAVNVGWVPSLEAGSPESFSSGYLPDVTVKSEPDVLVPSLPEPVISAVVAPIEEKPTPVPVPAKGKHYRGVRQRPWGKFAAEIRDPAKNGARVWLGTFETAEDAALAYDRAAYRMRGSRALLNFPLRVNSGEPDPVRVTSKRLSPEPSSSSDSVSTTKRRKKTVGPRVPVVTGQVEMKTGQVGSQVAHCTRGEQLLVS 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00417 278 ProSiteProfiles AP2/ERF domain profile. 147 205 IPR001471 GO:0003700|GO:0006355
Aip05g00417 278 CDD AP2 146 205 IPR001471 GO:0003700|GO:0006355
Aip05g00417 278 MobiDBLite consensus disorder prediction 209 246 - -
Aip05g00417 278 SUPERFAMILY DNA-binding domain 147 207 IPR016177 GO:0003677
Aip05g00417 278 PRINTS Ethylene responsive element binding protein signature 171 187 IPR001471 GO:0003700|GO:0006355
Aip05g00417 278 PRINTS Ethylene responsive element binding protein signature 148 159 IPR001471 GO:0003700|GO:0006355
Aip05g00417 278 SMART rav1_2 147 211 IPR001471 GO:0003700|GO:0006355
Aip05g00417 278 Pfam AP2 domain 147 197 IPR001471 GO:0003700|GO:0006355
Aip05g00417 278 Gene3D AP2/ERF domain 146 208 IPR036955 GO:0003700|GO:0006355
Aip05g00417 278 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1-RELATED 33 264 - -
Aip05g00417 278 PANTHER DNA-BINDING DOMAIN 33 264 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00417 Aip-Chr5 4687475 4688936 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00417 1 277 AP2-EREBP Transcription Factor Family AT4G17500 51.678 1.69e-85 255
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Aip05g00417 AP2 1.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00417 K09286 - gmx:100819649 347.821