Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00406 ATGGACGTGGAGCCGCAAAAACCCCTTGTCTCTCCCATCATTGTCAACTCTGCTGCTTCCTCATCTTCCCCCGATCAATCTTCACCTCCACCACCCAAACCACCCGCCAAAAAGAGGGTCGCTGCTAGTGGATACCGCGGAGTACGCATGCGCCAATGGGGCAAATGGGTCTCTGAAATTAGAGAGCCCAAGAAGAGGAACAGAATCTGGCTCGGAACTTACGCCACTGCTGAAATGGCGGCTCGAGCCCACGACGCCGCGGCTCTAGCAATCAAAGGCCGCGCTGCTATCCTTAACTTCCCCGAACTCGGCCCGCACCTTCCACGTCCGCCGACCAATTCCCCTAAGGACATACAAGCCGCCGCTGCCAAGGCAGCCGCATTGGATTACTTTCCAAGCCATGAAGCCGTAGCCAATCCCAGCCCAATCGTGTCCGCGGCGTCCTCGTCGTCCTCCTCGTCCTCTTCCTCCCACCCTAAGGACAATGAAGAATCGCCGAATTCATCGATGGACAAGGAGGATGACATGTTTACGGACCTCCCTGACCTGATAATTGACTTGGATCACGGTGGTCGAGGAAGTGAATTTGATTACTCGACGCGTTGGCTTGTGAACGAAGCCGACCAACTCGACTCGGCTTTCCAGCTCGCAGAGCCTTTCCAGTGGGAGTCAGTGCCCTACTAA 684 0.5599 MDVEPQKPLVSPIIVNSAASSSSPDQSSPPPPKPPAKKRVAASGYRGVRMRQWGKWVSEIREPKKRNRIWLGTYATAEMAARAHDAAALAIKGRAAILNFPELGPHLPRPPTNSPKDIQAAAAKAAALDYFPSHEAVANPSPIVSAASSSSSSSSSSHPKDNEESPNSSMDKEDDMFTDLPDLIIDLDHGGRGSEFDYSTRWLVNEADQLDSAFQLAEPFQWESVPY 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00406 227 ProSiteProfiles AP2/ERF domain profile. 44 101 IPR001471 GO:0003700|GO:0006355
Aip05g00406 227 CDD AP2 43 103 IPR001471 GO:0003700|GO:0006355
Aip05g00406 227 MobiDBLite consensus disorder prediction 142 163 - -
Aip05g00406 227 Gene3D AP2/ERF domain 44 102 IPR036955 GO:0003700|GO:0006355
Aip05g00406 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 27 222 - -
Aip05g00406 227 PRINTS Ethylene responsive element binding protein signature 45 56 IPR001471 GO:0003700|GO:0006355
Aip05g00406 227 PRINTS Ethylene responsive element binding protein signature 67 83 IPR001471 GO:0003700|GO:0006355
Aip05g00406 227 SMART rav1_2 44 107 IPR001471 GO:0003700|GO:0006355
Aip05g00406 227 Pfam AP2 domain 43 93 IPR001471 GO:0003700|GO:0006355
Aip05g00406 227 SUPERFAMILY DNA-binding domain 43 101 IPR016177 GO:0003677
Aip05g00406 227 MobiDBLite consensus disorder prediction 1 44 - -
Aip05g00406 227 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF043 27 222 - -
Aip05g00406 227 MobiDBLite consensus disorder prediction 142 176 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00406 Aip-Chr5 4533706 4534458 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00406 45 220 AP2-EREBP Transcription Factor Family AT2G44940 47.692 1.22e-46 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Aip05g00406 AP2 2.2e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00406 - - ahf:112747744 355.525