Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00405 ATGGAAGGGAATGGATCAACTAAGAAAACATATAATAGAGGGGCGTGGACACCGGAGGAAGATCAAAAGCTAGCTCAATGCATAGAGGTTCATGGACCCAAGAGGTGGAAGACCGTTGCAACCAAATCAGGTCTAAACAGATGTGGAAAGAGTTGCCGCTTGAGATGGTTGAACTACCTTAGACCTAATATCAAGAGAGGCAACATTTCAGATGAAGAAGAGGATTTGATCATAAGGCTTCACAAGTTGCTAGGAAACAGGTGGTCGTTGATAGCAAAGAGGCTTCCAGGACGAACAGACAATGAAATCAAGAACTACTGGAATTCATGTTTGTGCAAGAAGGTTAATCCCAAAGATCTAAAACCCCACACTAGTTCAACTACGCCACAAGAAACTCGTGCTGACGAGGGAATATCATCAGCACTAGAAAGTGGAGGAACTGGGCACATGGAAATGAAGTTTGATTTCAACGAATTTTTCGACTTCTCAATTGACGAAGGAGCATATGCATTGGATTGGGTGAACAAGTTTCTGGAGCTTGATGTAATCCCAGAGAGTTCAACCGAGTAA 570 0.4298 MEGNGSTKKTYNRGAWTPEEDQKLAQCIEVHGPKRWKTVATKSGLNRCGKSCRLRWLNYLRPNIKRGNISDEEEDLIIRLHKLLGNRWSLIAKRLPGRTDNEIKNYWNSCLCKKVNPKDLKPHTSSTTPQETRADEGISSALESGGTGHMEMKFDFNEFFDFSIDEGAYALDWVNKFLELDVIPESSTE 189
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00405 189 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 4 185 - -
Aip05g00405 189 ProSiteProfiles Myb-like domain profile. 61 111 IPR001005 -
Aip05g00405 189 Gene3D - 69 139 - -
Aip05g00405 189 Gene3D - 13 65 - -
Aip05g00405 189 PANTHER TRANSCRIPTION FACTOR MYB114-LIKE 4 185 - -
Aip05g00405 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 8 64 IPR017930 -
Aip05g00405 189 SMART sant 65 113 IPR001005 -
Aip05g00405 189 SMART sant 12 62 IPR001005 -
Aip05g00405 189 CDD SANT 15 60 IPR001005 -
Aip05g00405 189 MobiDBLite consensus disorder prediction 120 142 - -
Aip05g00405 189 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 115 IPR017930 -
Aip05g00405 189 Pfam Myb-like DNA-binding domain 66 110 IPR001005 -
Aip05g00405 189 Pfam Myb-like DNA-binding domain 13 60 IPR001005 -
Aip05g00405 189 CDD SANT 70 108 IPR001005 -
Aip05g00405 189 ProSiteProfiles Myb-like domain profile. 8 60 IPR001005 -
Aip05g00405 189 SUPERFAMILY Homeodomain-like 12 107 IPR009057 -
Aip05g00405 189 MobiDBLite consensus disorder prediction 121 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00405 Aip-Chr5 4519727 4520384 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00405 11 155 MYB Transcription Factor Family AT5G40330 52.000 5.07e-51 162
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Aip05g00405 Myb_DNA-binding 5.5e-18 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00405 K09422 - gmx:100816449 264.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00405 05 4519727 4520384 Aip05g00405 05 4519727 4520384 ECH