Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00404 ATGGGTATCTGCTTTTCATCCACCAAGGTCAGTGGCTCCAACAGCAACAACAACCACCATGGCAACGGAAACTCGGCGACCACCGTAAACCGGAACCGGAAACGGAATACAATTACTCAATCAACGGTGACCAACCCGGCGGCGGCCACCACCACAGTGGCGAGCGTCCACAACGGTCAGAGGAGGAAGGACGATGAAAAGAAGAATAGTCATCATCATCATCATTCGCAGAAGCCGAAGGAGAAGCCGAAGACGACGACGTTGACGACGAGAAAGAACGTGCCGTGCGGAAAGCGAACGGATTTCGGTTACGAGAAGAATTTCGACAAGAGATTCACGCTGGGGAAGCTTTTGGGTCATGGACAATTCGGTTACACCTATGTCGGTATTGATAAGGCCAATGGGGATCGTGTTGCCGTCAAGAGGCTCGAGAAGGCCAAGATGGTTCTACCCATAGCTGTTGAGGATGTTAAGCGAGAGGTCAAGATATTGAAAGAACTTACTGGCCATGAAAACGTGGTCCAATTCTATAATGCTTTTGAGGATGATTCATACGTGTACATAGTTATGGAGTTATGCGAGGGTGGAGAACTGCTAGATCGGATACTGGCCAAGAAGGACAGCCGTTACACTGAAAAAGATGCAGCAGTGATTGTAAGACAGATGCTTAAGGTTGCAGCTGAGTGTCATTTACACGGTTTGGTTCATCGGGACATGAAACCAGAGAATTTTCTTTTCAAGTCTACCAAAGAAGATTCACCTCTAAAGGCCACAGATTTTGGGTTGTCCGATTTCATAAAACCTGGTAAGAGGTTTCAAGATATTGTGGGCAGTGCTTACTATGTTGCACCAGAAGTGCTAAAAAGAAAGTCGGGCCCTGAATCAGATGTATGGAGTATTGGTGTGATTACATACATTTTGCTTTGTGGTAGACGCCCATTTTGGGATAAGACCGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTCCGCCGCAAACCATGGCCATCCATAAGCAGTGCTGCCAAAGATTTCGTGAAGAAATTATTGGTAAAGGATCCTCGAGCAAGATTAACTGCTGCCCAGGCTCTATCACATCCATGGGTTAAAGAAGGAGGAGAGGCATTGGAGATGCCTATTGATATATCTGTCCTAAACAACATGCGACAATTTGTGAAGTATAGTCGATTGAAACAATTTGCACTAAGGGCATTGGCTAGCACACTTGATGAAGAAGAGATATCTGATCTAAAAGATCAGTTTGACGCAATAGATGTTGACAAAAATGGTTCCATTAGCTTAGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTGAAGGAATCACGTGTATTAGAGATATTGCAAGCGATAGATAGCAACACAGATGGGTTAGTCGATTTCACTGAATTTGTGGCGGCTGCATTACATGTACATCAATTGGAGGAACACAACTCTGAGAAATGGCATCAACGGTCACGAGCTGCCTTTGAGAAATTCGACATAGATAAGGATGGATATATTACTCCAGATGAACTTAGAATGCATACCGGCTTGAGGGGCTCCATTGATCCGTTGCTTGAGGAAGCTGATATTGACAAGGATGGGAAAATCAGCCTATCGGAATTCCGTAGACTTCTCAGAACTGCAAGCATTAGTTCTCAACAAGTGACCAGCCCCCATCGGCGCAAGCTGTAG 1716 0.454 MGICFSSTKVSGSNSNNNHHGNGNSATTVNRNRKRNTITQSTVTNPAAATTTVASVHNGQRRKDDEKKNSHHHHHSQKPKEKPKTTTLTTRKNVPCGKRTDFGYEKNFDKRFTLGKLLGHGQFGYTYVGIDKANGDRVAVKRLEKAKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVIVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPSISSAAKDFVKKLLVKDPRARLTAAQALSHPWVKEGGEALEMPIDISVLNNMRQFVKYSRLKQFALRALASTLDEEEISDLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAAALHVHQLEEHNSEKWHQRSRAAFEKFDIDKDGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLSEFRRLLRTASISSQQVTSPHRRKL 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00404 571 ProSitePatterns Protein kinases ATP-binding region signature. 118 141 IPR017441 GO:0005524
Aip05g00404 571 MobiDBLite consensus disorder prediction 1 57 - -
Aip05g00404 571 Gene3D Transferase(Phosphotransferase) domain 1 198 393 - -
Aip05g00404 571 ProSitePatterns EF-hand calcium-binding domain. 507 519 IPR018247 -
Aip05g00404 571 ProSitePatterns EF-hand calcium-binding domain. 428 440 IPR018247 -
Aip05g00404 571 ProSiteProfiles Protein kinase domain profile. 112 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00404 571 ProSitePatterns EF-hand calcium-binding domain. 465 477 IPR018247 -
Aip05g00404 571 ProSiteProfiles EF-hand calcium-binding domain profile. 494 529 IPR002048 GO:0005509
Aip05g00404 571 ProSiteProfiles EF-hand calcium-binding domain profile. 415 450 IPR002048 GO:0005509
Aip05g00404 571 ProSiteProfiles EF-hand calcium-binding domain profile. 452 487 IPR002048 GO:0005509
Aip05g00404 571 SUPERFAMILY Protein kinase-like (PK-like) 110 385 IPR011009 -
Aip05g00404 571 Pfam EF-hand domain pair 500 553 IPR002048 GO:0005509
Aip05g00404 571 Pfam EF-hand domain pair 419 480 IPR002048 GO:0005509
Aip05g00404 571 ProSitePatterns EF-hand calcium-binding domain. 537 549 IPR018247 -
Aip05g00404 571 Pfam Protein kinase domain 113 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00404 571 Gene3D - 394 552 - -
Aip05g00404 571 ProSiteProfiles EF-hand calcium-binding domain profile. 532 559 IPR002048 GO:0005509
Aip05g00404 571 SMART efh_1 419 447 IPR002048 GO:0005509
Aip05g00404 571 SMART efh_1 498 526 IPR002048 GO:0005509
Aip05g00404 571 SMART efh_1 456 484 IPR002048 GO:0005509
Aip05g00404 571 SMART efh_1 528 556 IPR002048 GO:0005509
Aip05g00404 571 SMART serkin_6 112 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00404 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 234 246 IPR008271 GO:0004672|GO:0006468
Aip05g00404 571 MobiDBLite consensus disorder prediction 1 94 - -
Aip05g00404 571 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 23 562 - -
Aip05g00404 571 CDD STKc_CAMK 111 371 - -
Aip05g00404 571 Gene3D - 413 482 - -
Aip05g00404 571 Gene3D Phosphorylase Kinase; domain 1 105 197 - -
Aip05g00404 571 SUPERFAMILY EF-hand 401 555 IPR011992 -
Aip05g00404 571 PANTHER SERINE/THREONINE-PROTEIN KINASE 23 562 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00404 Aip-Chr5 4504020 4509183 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00404 1 566 EF-hand Containing Proteins AT2G17890 74.517 0.0 871
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Aip05g00404 Pkinase 2e-69 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00404 K13412 - gmx:100817249 920.998
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00404 05 4504020 4509183 Aip05g00404 05 4504020 4509183 ECH