Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00403 ATGAATGCACTAATAAGTAAGGTGGCTCGTGGATGGCACAAGTTTGATGCGCGTGTTCTCTTCTCTCTCTCTCTCTCTCTCTCTCTCTCCAACTGCAGGCAGATTCAGATTTCTCCTCCTCCTCCCCCTCCCCCTCCCCCTCTTCGCCTCCCACTTAGAACGCCTTCCCTACCCCAAAACCTCTTTAAGGTCACTAGAGAAAAGGGGCAAGCGGAACCACCGCAGGATCCAGCTGTCGCCGCAAGGAAAGTTCAGAAGGCTGACCGCGAGAAACTCCGCCGTGATCGATTAAACGACCACTTCCACGATTTGGCCAACACTTTAGATCCTGATAGGCCAAGGAACGACAAGGCAACCATCCTCACTGATACGATTCAAATGCTTAAAGATTTAACTGCCGAAGTTAATAGGTTGAAAACCGAGCATAAAGCGCTCTCTGATGAGTCCCGCGAGCTAATGCAAGAGAAGAATGAACTCAGGGAAGAGAAGGCGTCCTTGAAATCGGATATAGAAAACCTTAATTCTCAGTATCAGCAGAGGGCCAGAATGATGTTCCCGTGGACTGCAATGGACCACTCTGTCGTAATGGCACCACCACCTTATTCATATCCGGTTCCTATACCTATCCCTCCTGCTCCTGTTCCAATTCACCCAACTCTTCAACCCTTTCCTTATTTTGGAAATCAAAACCCTCCTCACATTCCTACTCCGTGTTCAACATATGTTCCATTCTCTGCTCCAATTAATGCCGCGCTTGACTTGCCCTCAGCTCAGTATGCTTCTGCATCTCATGTTCCCACCCAAAAGGATTGTCGGAGCAAGTCACCACCTCATAGGAGAATCACTGATAGCGAGTCTCATGATGTGGCTACGGAGCTTGAACTTAAGATGCCTGGATCATCATCAACACAGGAGGAATCTTCTTCCGGGGGAACGAAGAAGGTCAAGCATTCAGGGAGGAAGGATAGAGTCGTCGCAGAAGGGAGTGCTTCAAGCCGGTATTCAACGTCTCATGGACTTCAAGATAGCTCCAACAGTGTGGGCGACATCCCAAAGGCTGATAGTTGA 1068 0.4906 MNALISKVARGWHKFDARVLFSLSLSLSLSNCRQIQISPPPPPPPPPLRLPLRTPSLPQNLFKVTREKGQAEPPQDPAVAARKVQKADREKLRRDRLNDHFHDLANTLDPDRPRNDKATILTDTIQMLKDLTAEVNRLKTEHKALSDESRELMQEKNELREEKASLKSDIENLNSQYQQRARMMFPWTAMDHSVVMAPPPYSYPVPIPIPPAPVPIHPTLQPFPYFGNQNPPHIPTPCSTYVPFSAPINAALDLPSAQYASASHVPTQKDCRSKSPPHRRITDSESHDVATELELKMPGSSSTQEESSSGGTKKVKHSGRKDRVVAEGSASSRYSTSHGLQDSSNSVGDIPKADS 355
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00403 355 Gene3D - 79 164 IPR036638 GO:0046983
Aip05g00403 355 MobiDBLite consensus disorder prediction 329 355 - -
Aip05g00403 355 SMART finulus 87 137 IPR011598 GO:0046983
Aip05g00403 355 PANTHER TRANSCRIPTION FACTOR BHLH121 66 354 IPR044579 GO:0003700|GO:0055072
Aip05g00403 355 MobiDBLite consensus disorder prediction 261 355 - -
Aip05g00403 355 Pfam Helix-loop-helix DNA-binding domain 82 131 IPR011598 GO:0046983
Aip05g00403 355 PANTHER TRANSCRIPTION FACTOR BHLH11 66 354 - -
Aip05g00403 355 MobiDBLite consensus disorder prediction 271 292 - -
Aip05g00403 355 Coils Coil 121 176 - -
Aip05g00403 355 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 82 149 IPR036638 GO:0046983
Aip05g00403 355 MobiDBLite consensus disorder prediction 310 327 - -
Aip05g00403 355 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 81 131 IPR011598 GO:0046983
Aip05g00403 355 CDD bHLH_AtILR3_like 86 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00403 Aip-Chr5 4501103 4502606 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00403 79 305 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G19860 57.021 3.14e-80 246
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Aip05g00403 HLH 4.6e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00403 - - ahf:112747741 563.918
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00403 05 4501103 4502606 Aip05g00403 05 4501103 4502606 ECH
Aip03g01041 03 10096542 10099484 Aip05g00403 05 4501103 4502606 ECH