Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00400 ATGGCTGAAGAGAGGTACAGCGGCGTCGTTCAGTGGTTCAGCAACTCCAAGGGCTTCGGCTTCATCAAGCCCGACCAAGGCGGTGACGACCTCTTCGTCCACCACTCCTCCATCCAATCCGACGGCTCTTTCCGAACCCTAGTTGATGGCGATCGCGTCGAGTTCTCCATTGCTGACAACAGCGACAAGCCCAAGGCTCTTGACGTCACTGGCCCCAACGGCGCCCCTCTGCGCTCCGCTCCCGACTCTGCTCGCGCCGGTAACGATAACAGACGCAGCGCTGCCGTGCTGGCAATGGCGGTGGTGGCGGCGGCGGCGGTGCATGCTAGGCACATGGCGAGGGACTGCAGTGGAGGTGGCGGCGGCGGTAATGGTGGTGGTTGCTTTAAGTGCGGTGAGTTTGGGCACATGGCGAGGGACTGCAGTGGAGGTGGCGGTAACGGTGGTGGTGGTTGCTATAGGTGTGGTGAGGTTGGTCACTTGGCTAGGGATTGCAACAGAGAAGGTGGTTCCGGTGCTGGTGGAAACGGTGGAAAGAGCACGTGCTTCAATTGTGGGAAACCTGGGCATTTTGCTAGGGAGTGCGTTGAGGCCTCTGGTTAA 603 0.602 MAEERYSGVVQWFSNSKGFGFIKPDQGGDDLFVHHSSIQSDGSFRTLVDGDRVEFSIADNSDKPKALDVTGPNGAPLRSAPDSARAGNDNRRSAAVLAMAVVAAAAVHARHMARDCSGGGGGGNGGGCFKCGEFGHMARDCSGGGGNGGGGCYRCGEVGHLARDCNREGGSGAGGNGGKSTCFNCGKPGHFARECVEASG 200
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00400 200 CDD CSP_CDS 6 71 IPR002059 GO:0003676
Aip05g00400 200 PANTHER COLD SHOCK PROTEIN 2 1 91 - -
Aip05g00400 200 PANTHER COLD SHOCK PROTEIN 2 110 199 - -
Aip05g00400 200 MobiDBLite consensus disorder prediction 62 89 - -
Aip05g00400 200 ProSiteProfiles Cold-shock (CSD) domain profile. 5 71 IPR002059 GO:0003676
Aip05g00400 200 ProSiteProfiles Zinc finger CCHC-type profile. 182 195 IPR001878 GO:0003676|GO:0008270
Aip05g00400 200 SUPERFAMILY Retrovirus zinc finger-like domains 169 196 IPR036875 GO:0003676|GO:0008270
Aip05g00400 200 Gene3D - 6 84 IPR012340 -
Aip05g00400 200 ProSitePatterns Cold-shock (CSD) domain signature. 19 38 IPR019844 -
Aip05g00400 200 PRINTS Cold shock protein signature 8 23 IPR002059 GO:0003676
Aip05g00400 200 PRINTS Cold shock protein signature 29 38 IPR002059 GO:0003676
Aip05g00400 200 PRINTS Cold shock protein signature 45 63 IPR002059 GO:0003676
Aip05g00400 200 SMART csp_8 7 72 IPR011129 GO:0003676
Aip05g00400 200 Pfam 'Cold-shock' DNA-binding domain 7 71 IPR002059 GO:0003676
Aip05g00400 200 Gene3D - 149 172 - -
Aip05g00400 200 Gene3D - 173 200 - -
Aip05g00400 200 Pfam Zinc knuckle 181 195 IPR001878 GO:0003676|GO:0008270
Aip05g00400 200 Pfam Zinc knuckle 151 165 IPR001878 GO:0003676|GO:0008270
Aip05g00400 200 Pfam Zinc knuckle 127 142 IPR001878 GO:0003676|GO:0008270
Aip05g00400 200 ProSiteProfiles Zinc finger CCHC-type profile. 128 141 IPR001878 GO:0003676|GO:0008270
Aip05g00400 200 SUPERFAMILY Nucleic acid-binding proteins 3 71 IPR012340 -
Aip05g00400 200 Gene3D - 108 148 - -
Aip05g00400 200 SUPERFAMILY Retrovirus zinc finger-like domains 119 168 IPR036875 GO:0003676|GO:0008270
Aip05g00400 200 SMART c2hcfinal6 151 167 IPR001878 GO:0003676|GO:0008270
Aip05g00400 200 SMART c2hcfinal6 181 197 IPR001878 GO:0003676|GO:0008270
Aip05g00400 200 SMART c2hcfinal6 127 143 IPR001878 GO:0003676|GO:0008270
Aip05g00400 200 ProSiteProfiles Zinc finger CCHC-type profile. 152 165 IPR001878 GO:0003676|GO:0008270
Aip05g00400 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 1 91 - -
Aip05g00400 200 PANTHER COLD SHOCK DOMAIN PROTEIN 2 110 199 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00400 Aip-Chr5 4467923 4468598 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF CSD Aip05g00400 CSD 1e-23 CL0021
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00400 K09250 - gmx:100806783 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00400 05 4467923 4468598 Aip05g00400 05 4467923 4468598 ECH