Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00390 ATGGCAGAAGACAGATATGAAACCTGTTCTGAAGGTTCTGCATGTTCTCAAATGGGAAGCAATAATAAGTGCAAGCATGTGTTTGATAGATTATGTGGTTTTGCACCTTCATGGAATTGGAACACAAGCACCACAACCACAGCACCACCACCAAGTGGCAGAAGAATCTTCCATAGAGATGTTGAAAAAGAAGCATTCCAATATGCAAGTAGTAGCCATTGCCTCTCATCCTACTACAGTGTCTTTGTTGTTCGCCTAGCAATCATGGTGATGCTAGCAATCTTGATAGGGCTACTTACTATTCTAACATGGCATTTCACCAAGATTTACACAACAAAATCACTCAAAACCCTGGCATATGATCTGCGTTACGAGCTTCTTCAACGCCCAATCTTGAGGATGTGGAACATTCTGAATACTACGGCCGAGATCACCACGGCTCAGGTGAAGCTTTCTCAGTATGTGATCAGGCGTTACAGCAACCCTGTTAATCAAGCAGAGCAAGTTGAGCTGTATGAAGCAATGAGGGCTATAACATGGGCATTGTTTTCTAGTAAGAAAGCTCTGAACTCCATAACCATCAATTATAAGAATGGATTTGTCCAAGCTTTCCATAGAGATCTTAAGGATAACAACACATCTTACATCTATTCGGATCTCTCCAATTACTCTATGGTTGCTAATGAGATGAATTCCTTTTCGGCGCATCAGGCTTGGAATGATAAGGCCATTCATGGTAACAAATCAGCAATTTGGTACCGTGAGCCGCTTGATCCTGTCACTGGGGATAAGATTGGGAAAGCTATGCAGATTGCGCCGGAAGACTTAATCAACATAGCTGGTCTTTCACAAGTACCTGATGGTGTGGCCTCATGGCATGTTGCAGTGAGCAAGTTCACTGATTCGCCATTGCTTTCAGCAGCATTACCTGTTTGGGATTCTTCTAATAAGAGTATTATGGCAGTTGTGGGTGTCACAACGGCGCTTTATAGCGTTGGACAGCTGATGAAGGAGCTAGTTGAGATGCACAGTGGTCACATGTACTTGACTTCACAAGAGGGTTACTTGCTTGCAACTTCCACAAATGCACCTCTGCTGACAAATTCAACAAAGCATCCAACGCTTAAGATGGCGGTTGATTGCGAAAATGAAGTGATCAAACTCGGTGCTGAGTGGTTGCAGAGAGCTTATGGAAACCATTCTCCTCCTAGTCATGAGGTTCATGTAGAAAATGCCAAGCTAGGCCACCAGCAATATTACATTGACTCTTTCTTCCTAAACTTAAAGAGACTTCCTTTGGTGGGGGTAATCATCATACCAAGAAAGTATATCATGGGGCAGGTTGATGAAAGAGCCTTCAAAACTTTGGTTATTCTAATATCCGCATCATTATGCATTCTAGTTATTGGATGTGTTTGCATTTTGATATTGACGAACGGAGTGTCGAAGGAAATGAAACTAAGAGCAGCATTGATAAGTCAGCTGGAAGCAAGAAGAAAGGCAGAGGCTTCAAGCAACTACAAAAGCCAATTTCTTGCGAACATGAGTCATGAATTAAGGACACCGATGGCAGCAGTAATTGGGTTGCTTGACATTCTTATATCTGATGACTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGCTCAACCGCACTACTCCGTCTTCTTAACAACATCTTGGATCTTAGCAAGGTGGAATCAGGAAAACTAGTCCTAGAAGATGCAGAATTTGACTTGGGTCGTGAACTTGAAGGGCTTGTAGATATGTTTTCTGTCCAGTGCATTAACCACAATGTAGAGACTGTTTTAGATCTGTCTGATGAAATGCCAAAGGTAGTAAGGGGTGATTCTGCTAGGGTGGTTCAAATTTTTACAAATTTGATCAACAATTCAATAAAGTTTACTCCATCTGGTCACATCATTCTGCGAGGATGGTGCGAATACCCAAATTCTTGCAATGGTAGTCCAATTTTTCCACTTGAACAGAAGAAATCACGGTGTATACAAAAGGCTAGAGAGAAGCAAAATGCAAACAACGAAAAGAGAACAACTAAGAGAGATAACAAAGTGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGCATTGACCCAAGTAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTCGACTGCATGGAGGCACTGGTCTTGGTCTCTGCATTGTCAGAAACTTGGTCAATAAGATGGGCGGAGAAATCAAGGTTGTCAAAAAGGAGGGCCAAGGAACACTCATGAGATTATGCTTAGTTCTCAGTACACCTATTGATGTCACAGAGCAACATTATGCATTGGATTTTACTGACAATAGCTTAGTGGTACTTCTTGCACTGCATGGCAACATGAGTCGCTTGATTACTTCCAAGTGGTTACAGAAAAATGGGGTTTGCACTATAGAAGCATCTGAATGGAATGGACTAACACAGGTTTTGAGGGAACTCTTTCATGCAAGAAGTCCAGTCCATAATAACAATAACTTTGATGCACATTATCCAGTAACCGAGGGATTGAAGTCTAAATTACTCAGCATACAAGACATGAAGAACCCGGTTTTCGTCATTGTTGTGGACATTGGGCTACTTGACTTGAGCACAGACATATGGAAGGAACAGCTTAACTTCCTTCATAGATACTTTGGGAGAGCAAGGTTTGTGTGGATGCTAAATCATGACACATCCAATAACATAAAGATGGAGATTCGTCGGAAAGGGAATGTTTTGATGGTCAACAAACCCCTTTATAAAGCGAAAATGGTTCACATTTTGGAAGCAGTCATAAAGGAGAGAAATCTTGAGCTGCAAAAGAGAAATAATATGATTGGTCCAAGGACCACTGCAAAAGAGGGCGAGTTGCATGAATTTCTTGAGATTGATTCTACTCATTTTGATGCTGGTAGCTCTGATGATTCGGACACTTCCGAAACGGTTGGTTCTAATCCTGTTAGTGTCGATGGAGATAAACAAATTGAATTGGTGACTAGATCACCCGCATCATCAACATACAAGACCAGTAATTGCTTAGTTGGATTAACCAATGAACATTTGGAAGATACTAATAATGCAAGGAAAGAAGAGTCATGTCAGAGTAGCCCCAGTTCTTCCAAACATGCCCTTGAAGAAAGTGACCCTAAATCACTGTCCACTAAAGAACCATCTCAAGGTGGAGATTCTGAATGTGGCGAAACACATAGGGCTGCCGGCCCAAATAATAATGCGGTCAATGGAAAAAATTCTCTTGAAGGCCTGAGGATATTGCTTGCAGAAGATACTCCTGTGCTTCAAAGGGTAGCAACCATAATGCTTGAGAAAATGGGAGCTTCTGTTGTTGCTGTAGGTGATGGACAACAAGCAGTAGATGCTCTCCATTGCAAGCTAGGTGTTGATGACTGCAGAAGGGATTCTCTCCAGAAGGAAAGAAACATGAGATCTCAAACAGAGATTTTGACTTCACCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGTTATGAAGCAACAAAAGCAATAAGGAAATCAGAAGTGGGAACAGGATTGCATATTCCAATTGTTGCCCTTACAGCTCATGCAATGTCATGTGATGAAGCCAAATGCCTTGAAGTTGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAGCAAATGGTGGCCACCATACTTTCACTCACCAAAAGAAAAACATCATGA 3753 0.4146 MAEDRYETCSEGSACSQMGSNNKCKHVFDRLCGFAPSWNWNTSTTTTAPPPSGRRIFHRDVEKEAFQYASSSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLKTLAYDLRYELLQRPILRMWNILNTTAEITTAQVKLSQYVIRRYSNPVNQAEQVELYEAMRAITWALFSSKKALNSITINYKNGFVQAFHRDLKDNNTSYIYSDLSNYSMVANEMNSFSAHQAWNDKAIHGNKSAIWYREPLDPVTGDKIGKAMQIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKSIMAVVGVTTALYSVGQLMKELVEMHSGHMYLTSQEGYLLATSTNAPLLTNSTKHPTLKMAVDCENEVIKLGAEWLQRAYGNHSPPSHEVHVENAKLGHQQYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTNGVSKEMKLRAALISQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLVLEDAEFDLGRELEGLVDMFSVQCINHNVETVLDLSDEMPKVVRGDSARVVQIFTNLINNSIKFTPSGHIILRGWCEYPNSCNGSPIFPLEQKKSRCIQKAREKQNANNEKRTTKRDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGEIKVVKKEGQGTLMRLCLVLSTPIDVTEQHYALDFTDNSLVVLLALHGNMSRLITSKWLQKNGVCTIEASEWNGLTQVLRELFHARSPVHNNNNFDAHYPVTEGLKSKLLSIQDMKNPVFVIVVDIGLLDLSTDIWKEQLNFLHRYFGRARFVWMLNHDTSNNIKMEIRRKGNVLMVNKPLYKAKMVHILEAVIKERNLELQKRNNMIGPRTTAKEGELHEFLEIDSTHFDAGSSDDSDTSETVGSNPVSVDGDKQIELVTRSPASSTYKTSNCLVGLTNEHLEDTNNARKEESCQSSPSSSKHALEESDPKSLSTKEPSQGGDSECGETHRAAGPNNNAVNGKNSLEGLRILLAEDTPVLQRVATIMLEKMGASVVAVGDGQQAVDALHCKLGVDDCRRDSLQKERNMRSQTEILTSPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKQMVATILSLTKRKTS 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00390 1250 Pfam His Kinase A (phospho-acceptor) domain 508 573 IPR003661 GO:0000155|GO:0007165
Aip05g00390 1250 Coils Coil 665 685 - -
Aip05g00390 1250 CDD HisKA 508 569 IPR003661 GO:0000155|GO:0007165
Aip05g00390 1250 CDD REC_hyHK_CKI1_RcsC-like 1102 1241 - -
Aip05g00390 1250 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 562 768 IPR036890 -
Aip05g00390 1250 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 620 770 IPR003594 -
Aip05g00390 1250 SUPERFAMILY CheY-like 1098 1247 IPR011006 -
Aip05g00390 1250 ProSiteProfiles Response regulatory domain profile. 1101 1245 IPR001789 GO:0000160
Aip05g00390 1250 PRINTS Bacterial sensor protein C-terminal signature 697 711 IPR004358 GO:0016310|GO:0016772
Aip05g00390 1250 PRINTS Bacterial sensor protein C-terminal signature 715 725 IPR004358 GO:0016310|GO:0016772
Aip05g00390 1250 PRINTS Bacterial sensor protein C-terminal signature 732 750 IPR004358 GO:0016310|GO:0016772
Aip05g00390 1250 PRINTS Bacterial sensor protein C-terminal signature 756 769 IPR004358 GO:0016310|GO:0016772
Aip05g00390 1250 Gene3D - 1080 1249 - -
Aip05g00390 1250 PANTHER TWO-COMPONENT HISTIDINE KINASE 22 1246 - -
Aip05g00390 1250 Pfam Response regulator receiver domain 1102 1241 IPR001789 GO:0000160
Aip05g00390 1250 SMART REC_2 1100 1241 IPR001789 GO:0000160
Aip05g00390 1250 PANTHER OSMOSENSOR HISTIDINE KINASE 22 1246 - -
Aip05g00390 1250 MobiDBLite consensus disorder prediction 980 1020 - -
Aip05g00390 1250 SMART HKATPase_4 620 772 IPR003594 -
Aip05g00390 1250 Gene3D - 572 773 IPR036890 -
Aip05g00390 1250 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 495 574 IPR036097 GO:0000155|GO:0007165
Aip05g00390 1250 SMART HisKA_10 507 573 IPR003661 GO:0000155|GO:0007165
Aip05g00390 1250 Gene3D - 475 571 - -
Aip05g00390 1250 MobiDBLite consensus disorder prediction 1035 1093 - -
Aip05g00390 1250 ProSiteProfiles Histidine kinase domain profile. 514 772 IPR005467 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00390 Aip-Chr5 4387333 4393619 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00390 1 1246 Histidine Kinase Gene Family AT2G17820 63.579 0.0 1570
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Aip05g00390 HATPase_c 3.2e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00390 - - gmx:100814068 1967.2
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00390 05 4387333 4393619 Aip05g00390 05 4387333 4393619 ECH