Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00377 atgcccactctaagcactgaggcttgtgctagAGACGTTTGGAAAGATGGTCAATGGAATCTCCATGATATTTTCTCTATCATTCCAGAAGATGTCAAACAGCGTTTGAATGCTTATAATCCGAATTTGAATGCTGGAGAGAGTTTGGGTTGGTCGTGGGGGGTGGCATCTTCTAGACTCTACTCAGCTAGGAGTGGGTACAGTTGGCTAGCCAAAAGAAAGTTTGACTGGAATGAGCATGATAATTGGTTGTGGGTATGGCGACTGCATATTCCTGAGAAGTACAAGTTCTTGATTTGGCTCAGTCTTCATAATGCTATTCCTACGGCAGAGTTTCGTTTGGGTCATGGTTTAGCTTTATCTAGCACCTGTCATCGATGTCAGAATGGTTCTGAATCCATTCTTCATTGTCTTCGGGAGTGCCCTAGTGCCAAAGAGGTCTGGAACCTTTTAGGCCTGTATTCAGATAACTCGAATTTACATGATTGGCTCTACAGAGGTGCAAAGAGTGGAGATGTTTTTCTTTTCTTTTCGACCATCTGGTGGATTTGGAGAAGCAGGAATCAGGACTTATTTAGTATAGATGATTCATGGAGTGCTAGTAAAGTGGTGAGTTTGATTCGTAGTTCAGTAAGGGAGTTTCACACTATTTTTGCTATGCATCAATCTTTGTCTCCTCCTTCACTTTGTTTGCATTGGGTTCCACCTCCAGTTCATTCTGTTAAATTGAATTGTGATACTAGTTGGTTTGCTCCTTTTGGCTATGCTGGTTTTGGTTGTATCATTCGCAATCCTGATGGATGTTGGTTGAAAGGTTGCACTGGGAAAGTCGAAGTGTGCAGTGTTCTTTTTGCTGAATTATATGCAATTTGGAGAGGTTTACTTCTTGCTTGGGAGAGTGGATTTCGTGAGGTTATTTGTGAAACAGACTGTTTAGAAGCTCTTTTCTTGGTAAACCAAAGAATGCTTGGTAAGAATATTCCAGAATGGGATTTGGCAAAGCATATACAGGAGGTTATGAATAGGAATTGGAGAGTCTCTATTCTTTTAATTCAGAGGACTGCAAATAGTGTTGCAGATTCCATGCCACAAAACTGCATAGCACCAAAACCAGAATACAACACTAGTAGTAGTAGTCACTCTATGGAAGCAGCCTTAGAGAATAATAATACCAATGAACAACAATCCATACAAAAACTCACTATGTTCCCCATAACTTTGAAGTTTGAGGAATTGGTGTACAAAGTGAAACTAGAACAGAAAGGAGGATGTTGGGGAAGCAACAAATGGAGCTGCAAAGAGAAAACAATTCTGAATGGAATCAGTGGTTGTGTTTGCCCTGGTGAGATTCTTGCCATGCTTGGCCCTTCAGGGAGTGGCAAAACCACACTCCTTACAGCTCTCGGAGGCCGTCTCACCGGAAAACTCTCCTGGCAAGATAACATACAACAACAATCCATTCTCAGGTTCAATCAAGAGAAGAACAGGCTTCCAAAGACTTTAACAAGAGATGAGAAGGTTCATCATGTTGAGAGAGTGATCAGTGAATTGGGATTAACAAGGTGTAGGAGCAGCATGATTGGAGGACCTTTGTTCAGAGGAATTTCCGGTGGAGAAAAGCAGAGAGTTAGTATTGGACAAGAAATGCTTATTAATCCTAGCTTGTTGCTTCTTGATGAGCCTACTTCTGGTTTGGATTCCACAACTGCTCAGAGGATCTTGAACACTATTAAGAGACTCGCCGGCGGCGGAAGAACCGTTATAACCACCATTCACCAGCCATCTAGCAGGCTATACTACATGTTTGACAAGGTTGTGTTGCTCTCTGAAGGCTCTCCTATTTACTATGGTCCTGCTTCCACTGCTTTGGACTATTTCTCTTCACTTGGATTCTCTACTTCTGTCACTGTTAATCCTTCTGATCTCTTGCTTGATCTTGCCAATGGGATTGCTCCAGATTCAAAGCATGCAAGTGAACAAAGTGAGGGATTAGAACAAGAAAGGAAGCAAGTTAGAGAAGCACTAATATCAGCTTATGATAAGAACATAGCAACAAAGCTGAAAGCTGAGCTGTGCAGTGTTGAGGTGAACAACTACAACAACATGATGATCAAAGATGCTTGTGCAAGGAATCAGATAAATCAGGAGCAATGGTGCACAAGTTGGTGGCATCAGTTTAAAGTACTATTGCAGAGGGGAGTGAGGGAGAGAAGGTTTGAAGCATTCAATAGGCTGAGAATATTCCAAGTCATAAGTGTTGCTTTTCTTGGTGGACTCTTGTGGTGGCATACCCCAGAATCACACATTGAAGATCGGGTAGCATTGCTGTTTTTCTTCTCAGTTTTCTGGGGATTCTACCCTCTATACAATGCAGTATTCACATTCCCACAAGAGAGGAGAATGCTGATAAAGGAAAGATCTTCAGGAATGTACAGGCTCTCTTCCTACTTCTTAGCAAGAACAATAGGAGACTTGCCATTGGAGCTTGCACTTCTGACTGCATTTGTGTTCATAATCTATTGGATGGGAGGACTCAAACCTGATCCTGTTACATTCATCCTTTCTCTTCTTGTTGTTCTCTACAGTGTCCTTGTTTCTCAAAGCTTAGGCTTAGCATTTGGTGCTATATTAATGGAGATCAAACAAGCAACCACTCTAGCTTCTGTCACAACCCTTGTGTTCCTCATTGCTGGTGGATACTATGTTCAACAGATTCCACCTTTTATAGTGTGGCTAAAGTACTTGAGCTATAGCTACTACTGTTACAAGCTTCTTCTTGGTGTTCAATACACTCAAGATGATTACTATGAATGCTCAAAGAGTGTGATGTGCAAGGTTGCTGATTTTCCACCAATCAAATCAATGGGATTGAATCATCTTTGGGTTGATGTTTGCATTATGGCACTTATGTTGGTTGGTTATAGACTAATTGCTTATTTAGCACTCAATAGAGTAAGGTAG 2961 0.4093 MPTLSTEACARDVWKDGQWNLHDIFSIIPEDVKQRLNAYNPNLNAGESLGWSWGVASSRLYSARSGYSWLAKRKFDWNEHDNWLWVWRLHIPEKYKFLIWLSLHNAIPTAEFRLGHGLALSSTCHRCQNGSESILHCLRECPSAKEVWNLLGLYSDNSNLHDWLYRGAKSGDVFLFFSTIWWIWRSRNQDLFSIDDSWSASKVVSLIRSSVREFHTIFAMHQSLSPPSLCLHWVPPPVHSVKLNCDTSWFAPFGYAGFGCIIRNPDGCWLKGCTGKVEVCSVLFAELYAIWRGLLLAWESGFREVICETDCLEALFLVNQRMLGKNIPEWDLAKHIQEVMNRNWRVSILLIQRTANSVADSMPQNCIAPKPEYNTSSSSHSMEAALENNNTNEQQSIQKLTMFPITLKFEELVYKVKLEQKGGCWGSNKWSCKEKTILNGISGCVCPGEILAMLGPSGSGKTTLLTALGGRLTGKLSWQDNIQQQSILRFNQEKNRLPKTLTRDEKVHHVERVISELGLTRCRSSMIGGPLFRGISGGEKQRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLAGGGRTVITTIHQPSSRLYYMFDKVVLLSEGSPIYYGPASTALDYFSSLGFSTSVTVNPSDLLLDLANGIAPDSKHASEQSEGLEQERKQVREALISAYDKNIATKLKAELCSVEVNNYNNMMIKDACARNQINQEQWCTSWWHQFKVLLQRGVRERRFEAFNRLRIFQVISVAFLGGLLWWHTPESHIEDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALLTAFVFIIYWMGGLKPDPVTFILSLLVVLYSVLVSQSLGLAFGAILMEIKQATTLASVTTLVFLIAGGYYVQQIPPFIVWLKYLSYSYYCYKLLLGVQYTQDDYYECSKSVMCKVADFPPIKSMGLNHLWVDVCIMALMLVGYRLIAYLALNRVR 986
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00377 986 Pfam zinc-binding in reverse transcriptase 61 148 IPR026960 -
Aip05g00377 986 CDD RNase_H_like 243 362 IPR044730 -
Aip05g00377 986 Gene3D - 239 367 IPR036397 GO:0003676
Aip05g00377 986 ProSitePatterns ABC transporters family signature. 535 549 IPR017871 GO:0005524
Aip05g00377 986 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 374 478 - -
Aip05g00377 986 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 433 634 IPR027417 -
Aip05g00377 986 Pfam ABC-2 type transporter 725 930 IPR013525 GO:0016020|GO:0140359
Aip05g00377 986 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 374 478 - -
Aip05g00377 986 Pfam Reverse transcriptase-like 244 362 IPR002156 GO:0003676|GO:0004523
Aip05g00377 986 Gene3D - 427 629 IPR027417 -
Aip05g00377 986 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 495 984 - -
Aip05g00377 986 SMART AAA_5 447 612 IPR003593 -
Aip05g00377 986 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 407 635 IPR003439 GO:0005524
Aip05g00377 986 Pfam ABC transporter 438 563 IPR003439 GO:0005524
Aip05g00377 986 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 495 984 - -
Aip05g00377 986 Coils Coil 654 674 - -
Aip05g00377 986 SUPERFAMILY Ribonuclease H-like 241 362 IPR012337 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00377 Aip-Chr5 4214145 4222053 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00377 437 612 Calmodulin-binding Proteins AT2G36910 30.049 3.49e-10 62.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00377 K05681 - gmx:100794774 1018.45
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00377 05 4214145 4222053 Aip05g00377 05 4214145 4222053 ECH