Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00354 ATGGCGGAAACCGGTAACGGCAATGGCTTCATGTACCTCCACGGCGACCTCGACCTCAAAATCATTGAGGCTCGACACTTACCTAACATGGACATCGTCTCCGAGCGGTTCCGCCGCTGCGTCACCGCCTGCGACACCATCAACTTCCACTCCTCAGAACCCGCCGATACCGCCACCGCTGACGGCACCGACAACCCTCCTGCCACCGCCCGCCGCCACCGCGGTAAAATCATCACCAGCGACCCCTATGTCACTGTCTCTGTCCCCCAGGCCACCGTGGCCCGCACGCGCGTGATTCGCAACGCTCAGAACCCGCGTTGGGACGAACGCTTCAGCATCCCGCTTGCTCATCCTCTCGTCGACCTCGAGTTCCGCGTCAAGGACGACGACGTCTTCGGTGCCGAAACTATGGGCACCGTCAAGATTCCGGCAACAACTATCGCCACCGGCGAAGCCATTTCCGGCTGGTTCCCTATACTCAGTTCCTCCGGCAAGCCACCAAAGCCGAACGCCGCGCTCCGCATCGAGATGCAGTTCACGGCGGTTCAGGACAACCCGCTTTACCGGAGCGGCATCGCCGCCGATCCAGAGCACCGTGGTGTGCGGCACACGTACTTTCCCGTGAGGAAAGGGAGCTCGGTGAGGCTGTACCAGGACGCACATTGCCCCGAGGGTTTGTTGCCGGAGATTGAATTAGAAGGAGGGAAGGTTTATAAGCACGAGAAGTGCTGGGAAGATATATGCTACGCTATTTCCGAGGCTCATCACATGGTTTATGTAGTTGGCTGGTCGGTTTACCATAAGATTAAGCTCGTTAGAGAACCGACGAAGCCTTTGCCTCGTGGCGGAGACTTGACCCTTGGCGAGTTGCTCAAGTACAAGTCTCAAGAAGGGGTTAGGGTTCTCTTGATGGTTTGGGATGACAAGACTTCACATGATAAGTTCTTCTTTAAGTCGTCTGGAGTGATGCAAACTCATGATGAGGAAACCAAGAAGTTTTTTAAACATTCCTCTGTTATGTGTGTTCTGGCACCTCGCTATGGTAGCAGCAAGCTGAGCTTCTTGAAGCAGCAGGCAAACAGCTTATTAAAGTTGATTGTGATTGAAATTATACAGGTTGTTGGAACTGTCTTCACACACCACCAAAAGTGTGTTATTGTGGACACACAGGCTCCTGGTAATGATCGAAAGATAACTGTTTTTATGGGAGGTCTTGATCTGTGTGATGGTCGTTATGACACACCTCAGCATCGACTTTTCAAGGATCTTAATACTGTATTTGATGGTGATTTCCACAATCCTACATTTCCTGCTGGAACAAAGACTCCAAGGCAACCATGGCATGATTTACACTGCAGAATAGATGGGCCTGCTGCGTATGACATTCTTATTAATTTTGAGCAGCGATGGAGAAAATCTACTAAGTGGAGGGAGTTTGCTTTAATGTTCAAAAAAGCTTCTCAGTGGCATGATGATGCTTTAATACGAATAGAACGGATCTCCTGGATAGCAAGTCCTGCCATTCCTCATTCAAAAGAAAGGCATACAATTGTTCCAGATGACGACCCAAGAGTATGGGTTTCTCATGAAGCTGATCCTGAAACCTGGCATGTTCAGATCTTCCGCTCCATTGACTCTGGATCCCTGAAAGGATTTCCAAAGCGTGTTGATGTTGCTTTATCGCAGAATCTTATCTGTGCTAAAAATTTGGTCATAGACAAAAGCATTCAAACAGGATACATTCAAGCAATCAGATCTGCTCAACATTTCATTTATATTGAAAATCAATACTTCATTGGTTCATCATATGCATGGCTAGATTATAAAGACGCAGGGGCTGACAATCTTATCCCCATGGAACTGGCGCTGAAAATTGCTAGTAAAATCAGAGCAAACGAGAGATTTGCTGTTTATATTGTTTTACCAATGTGGCCAGAAGGTGATCCCAAAACTGGAGCTATGCAAGAAATCCTCTTTTGGCAGAGCCAGACAATGCATATGATGTATCAACTTGTTGCTAGAGAATTGAAATCAATGCAGCTTGATGATGTACGCCTGCAAGACTATCTCAACTTTTATTGCCTTGGAAATCGGGAAGCATTCAACGAAGAACCTGCAAGTGCAAATAATGGTCCCGTCTCAGGAGCATATGAGCATCGTCGATTTATGATTTATGTGCATGCTAAGGGGATGATTGTTGATGATGAGTATGTCATAGTGGGGTCTGCTAATATAAACCAAAGATCTATGGCTGGCACTAAGGATACTGAGATAGCTATGGGTGCATATCAACCCCATTATACCTGGTTTGGGAAGAAAAGACATCCATATGGTCAGATTTATGGTTACAGAATGTCGCTGTGGGCAGAGCATCTTGGCATGTCAGGAGAAATTTTCAGGGAACCAGAGAGTTTGGAGTGTGTGCGTAAAGTGAATGCAATTGCAGATGAAAACTGGAAAAGATTTGTTTCTGAAGAGTTTTCAGAGCTGCAAGGACATCTCCTGAGGTACCCTTTACATGTAGATCAGGATGGGACGGTTAGTTCTCTCGCTGATTGTGAGACTTTCCCAGATGCCGGTGTATATATTTACGGAAGAAGGAAATCGGAGGTCAATTCGCTTCTCCAAAACCCTAACATTTCGTCTTTCTTCGTTGAAACACCCGAAGCTGTTAACCCGTACGAATGGCAAGCGGATTCTCCTGTGAGAAGGAACTCAAGGTCCCCTTCCCCGTGGAGAGCTCAATCAAGATCCAGGTCAAGGTCCAGGTCTAGGCCTAGGTCTAGGTCTAGATCACGATCTATCCCAAGACAAAGGCCAAGGTCCCGTTCAAGAAGCCGCGGCAGATCAAGATCAAGAAGTCATGAGAGGGTGGGAGAGACTCAAAATCCAGGGAATACACTTTATGTGACAGGTCTATCGTCAAGGGTGACTGAGAGAGACTTAGAGGAGCACTTCTCTAAAGAAGGAAAAGTTGCATCATGTTTTCTTGTGGTGGAGCCTCGAACACGGATTTCTCGTGGTTTTGCTTTTATCACAATGGATTCTGTTGAGGATGCTAACCGGTGTATCAAATATCTAAATCAATCAGTTTTAGAGGGTCGCTACATCACAGTTGAGAGGTCGCGAAGAAAGCGGCCAAGAACTCCCACACCTGGACACTATCTTGGGTTGAAAAGTACAAGAGACTATGGGCACCGTGGTGGTGACCGTGGTGGTGATCGTGGAAGGTATCGAGGTGGACCTGGACGTGATGATTATCAATATCGACGGTCCCCTAGGCGATCACCATATCGAGGTGGCAGGGACTATTCTCCAAGGCGCTCTCCCTATGGTGGGGGTGGAAGATCTAGGAGGGAAAGGTCTAGGTCACCCCCTTACTCTCCATACGGCAGCCCAGATAGGAGATATGCTCGGGGATCTAGGTCGGACCGAAAAACCTGTTCCTTGGCAGAGTATTGGACGGTGCAAGGAATAAAATCGcttctagcttctaggatcggatcaGCAAAGATACGGTTCCGAGCAGCAGCATCCAAGTGGGCTATGTTCCACTACATGGCTCTGCTGAATCCTCCTCATCCTCCCTCTATCTTCTCTTCATTCCCATTCTTCACTCCTTCTTCACCGCAGTTTCTCAAATTCCCCAGAATCTGGAAGAACCCGCACTCTCTCCCCACATCCTTCCAGTCCTTCAACGAAGAAGACGAACACGTTATCGGCGACTGTCTCGTCTACGAGGAAGGAATTTTCGATGACCCCATTTCGCAAAACCAGACCAATTCCCACGCTGATAATTCTCTCACTCTCACCCCAACCAGAACCAAACCAAGTTCCAAGAAGCAGGTTGCTGAAATTGCCACTGAAAACTTGGTTCCCGACAAATGGAGGGAGGTTCAGGCGGAGCTCAACATAACCAAGAAGGAGAGGCGCAAGATTGCTCAGGAGATGGAGTTCAACAGCAAGGTTATGAAGAAGAGACAAGGCTTGGTTCCATTGAGGGACATGAACCTTGACGAGTATAAGGCTTATAAGGAGGCCAAGTTGGCACAACTGAAACCCCTTGTTCTCGATAACCCTTCTGGTTTTCCAGTGAAAGAGGAAGGTTCCATCAGAAAAGGAGGTGACTTGAATTATGGGTATGATAGTGGTGGTGGTGGTAGTTGGCGTGTAGAGCCTAAGAATCCTAAGTGGGCTGTTTATGGGAGGGGTTTGGACAATGTCACTGAGTTTTTCAATAGTGAGGACTATGACCCTGCCAGTGCTGATACTAAGAACAACGAAGGTCGCCGGAGGTTGTTCACTAAGGAGGAGAAGGCTTTATTGAATAAGCGAGTACCAGATTTGGAAGCTGCTACTTCAGATAAATGGCTTCCGCTGCACACTCTTGCTGCATGTGGAGAATTCTACCTTTTAGATTCTTTGATCAAGCATAATGTAGATATTAATGCTGTTGATAAGGATGGTTTGACAGCTCTTCACAAAGCGATCATTGGAAAAAAGCAAGCGATTACTAACTATCTCTTGAGAAATTCAGCTAATCCTTTCGTATTGGATAGAGATGGGGCCACCTTGTTGCACTATGCAGTACAAACAGCTTCTAGCCAGACAATTAAAATTCTCTTATTGTACAATGTGGATTTAAATCTTCAGGACAATGATGGCTGGACACCATTACATCTTGCCATTCAAGCTCAGAGAACAGATTTAGTTAGGCTTCTACTCATTAAAGGTGCTGATAAGACAATAAAGAACAAGGATGGTTTAACACCACTTGATCTTTGCCTTTACTTTGGTCAAAGTCCCAGAACATATGAGCTAATCAAGTTGTTGAAGTTGCCGCAAAGGCGCACAAGACTTGTGTCCAGGTAG 4872 0.4672 MAETGNGNGFMYLHGDLDLKIIEARHLPNMDIVSERFRRCVTACDTINFHSSEPADTATADGTDNPPATARRHRGKIITSDPYVTVSVPQATVARTRVIRNAQNPRWDERFSIPLAHPLVDLEFRVKDDDVFGAETMGTVKIPATTIATGEAISGWFPILSSSGKPPKPNAALRIEMQFTAVQDNPLYRSGIAADPEHRGVRHTYFPVRKGSSVRLYQDAHCPEGLLPEIELEGGKVYKHEKCWEDICYAISEAHHMVYVVGWSVYHKIKLVREPTKPLPRGGDLTLGELLKYKSQEGVRVLLMVWDDKTSHDKFFFKSSGVMQTHDEETKKFFKHSSVMCVLAPRYGSSKLSFLKQQANSLLKLIVIEIIQVVGTVFTHHQKCVIVDTQAPGNDRKITVFMGGLDLCDGRYDTPQHRLFKDLNTVFDGDFHNPTFPAGTKTPRQPWHDLHCRIDGPAAYDILINFEQRWRKSTKWREFALMFKKASQWHDDALIRIERISWIASPAIPHSKERHTIVPDDDPRVWVSHEADPETWHVQIFRSIDSGSLKGFPKRVDVALSQNLICAKNLVIDKSIQTGYIQAIRSAQHFIYIENQYFIGSSYAWLDYKDAGADNLIPMELALKIASKIRANERFAVYIVLPMWPEGDPKTGAMQEILFWQSQTMHMMYQLVARELKSMQLDDVRLQDYLNFYCLGNREAFNEEPASANNGPVSGAYEHRRFMIYVHAKGMIVDDEYVIVGSANINQRSMAGTKDTEIAMGAYQPHYTWFGKKRHPYGQIYGYRMSLWAEHLGMSGEIFREPESLECVRKVNAIADENWKRFVSEEFSELQGHLLRYPLHVDQDGTVSSLADCETFPDAGVYIYGRRKSEVNSLLQNPNISSFFVETPEAVNPYEWQADSPVRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSRSIPRQRPRSRSRSRGRSRSRSHERVGETQNPGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDSVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGHRGGDRGGDRGRYRGGPGRDDYQYRRSPRRSPYRGGRDYSPRRSPYGGGGRSRRERSRSPPYSPYGSPDRRYARGSRSDRKTCSLAEYWTVQGIKSLLASRIGSAKIRFRAAASKWAMFHYMALLNPPHPPSIFSSFPFFTPSSPQFLKFPRIWKNPHSLPTSFQSFNEEDEHVIGDCLVYEEGIFDDPISQNQTNSHADNSLTLTPTRTKPSSKKQVAEIATENLVPDKWREVQAELNITKKERRKIAQEMEFNSKVMKKRQGLVPLRDMNLDEYKAYKEAKLAQLKPLVLDNPSGFPVKEEGSIRKGGDLNYGYDSGGGGSWRVEPKNPKWAVYGRGLDNVTEFFNSEDYDPASADTKNNEGRRRLFTKEEKALLNKRVPDLEAATSDKWLPLHTLAACGEFYLLDSLIKHNVDINAVDKDGLTALHKAIIGKKQAITNYLLRNSANPFVLDRDGATLLHYAVQTASSQTIKILLLYNVDLNLQDNDGWTPLHLAIQAQRTDLVRLLLIKGADKTIKNKDGLTPLDLCLYFGQSPRTYELIKLLKLPQRRTRLVSR 1623
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00354 1623 MobiDBLite consensus disorder prediction 1041 1143 - -
Aip05g00354 1623 MobiDBLite consensus disorder prediction 918 952 - -
Aip05g00354 1623 MobiDBLite consensus disorder prediction 896 971 - -
Aip05g00354 1623 SMART ANK_2a 1488 1517 IPR002110 GO:0005515
Aip05g00354 1623 SMART ANK_2a 1554 1583 IPR002110 GO:0005515
Aip05g00354 1623 SMART ANK_2a 1521 1550 IPR002110 GO:0005515
Aip05g00354 1623 SMART ANK_2a 1587 1616 IPR002110 GO:0005515
Aip05g00354 1623 SMART ANK_2a 1455 1484 IPR002110 GO:0005515
Aip05g00354 1623 Pfam C2 domain 15 159 IPR000008 -
Aip05g00354 1623 Pfam Ankyrin repeats (3 copies) 1503 1585 IPR002110 GO:0005515
Aip05g00354 1623 SUPERFAMILY Phospholipase D/nuclease 573 807 - -
Aip05g00354 1623 MobiDBLite consensus disorder prediction 1060 1102 - -
Aip05g00354 1623 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 12 180 IPR035892 -
Aip05g00354 1623 Pfam Ankyrin repeats (many copies) 1459 1501 IPR002110 GO:0005515
Aip05g00354 1623 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 722 749 IPR001736 GO:0003824
Aip05g00354 1623 ProSiteProfiles Ankyrin repeat region circular profile. 1521 1553 - -
Aip05g00354 1623 PANTHER PHOSPHOLIPASE D 9 872 IPR015679 -
Aip05g00354 1623 PANTHER PHOSPHOLIPASE D DELTA 9 872 - -
Aip05g00354 1623 Gene3D Endonuclease Chain A 232 495 - -
Aip05g00354 1623 CDD RRM_RBMX_like 965 1044 - -
Aip05g00354 1623 CDD C2_plant_PLD 11 180 - -
Aip05g00354 1623 Gene3D C2 domain 13 187 IPR035892 -
Aip05g00354 1623 MobiDBLite consensus disorder prediction 1256 1278 - -
Aip05g00354 1623 Pfam Phospholipase D C terminal 797 866 IPR024632 -
Aip05g00354 1623 Gene3D - 1427 1613 IPR036770 -
Aip05g00354 1623 ProSiteProfiles Ankyrin repeat profile. 1554 1586 IPR002110 GO:0005515
Aip05g00354 1623 ProSiteProfiles Ankyrin repeat region circular profile. 1554 1586 - -
Aip05g00354 1623 MobiDBLite consensus disorder prediction 51 71 - -
Aip05g00354 1623 Pfam Phospholipase D Active site motif 376 411 IPR001736 GO:0003824
Aip05g00354 1623 Pfam Phospholipase D Active site motif 723 749 IPR001736 GO:0003824
Aip05g00354 1623 MobiDBLite consensus disorder prediction 899 917 - -
Aip05g00354 1623 SMART rrm1_1 967 1040 IPR000504 GO:0003723
Aip05g00354 1623 ProSiteProfiles Ankyrin repeat profile. 1488 1520 IPR002110 GO:0005515
Aip05g00354 1623 SUPERFAMILY Ankyrin repeat 1444 1604 IPR036770 -
Aip05g00354 1623 SMART pld_4 722 749 IPR001736 GO:0003824
Aip05g00354 1623 SMART pld_4 376 411 IPR001736 GO:0003824
Aip05g00354 1623 ProSiteProfiles Ankyrin repeat profile. 1521 1553 IPR002110 GO:0005515
Aip05g00354 1623 ProSiteProfiles C2 domain profile. 1 157 IPR000008 -
Aip05g00354 1623 Gene3D - 903 1051 IPR012677 -
Aip05g00354 1623 SUPERFAMILY Phospholipase D/nuclease 204 483 - -
Aip05g00354 1623 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 966 1044 IPR000504 GO:0003723
Aip05g00354 1623 SMART C2_3c 16 156 IPR000008 -
Aip05g00354 1623 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 968 1037 IPR000504 GO:0003723
Aip05g00354 1623 Gene3D Endonuclease Chain A 550 768 - -
Aip05g00354 1623 ProSiteProfiles Ankyrin repeat profile. 1455 1487 IPR002110 GO:0005515
Aip05g00354 1623 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 376 411 IPR001736 GO:0003824
Aip05g00354 1623 SUPERFAMILY RNA-binding domain, RBD 959 1076 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00354 Aip-Chr5 3904705 3922146 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00354 11 713 Phospholipase D Gene Family (Wang group) AT4G35790 68.555 0.0 1000
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00354 K01115 - gmx:100814486 1411.74