Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00319 ATGGACAAAAATGCTTCCTCCTCTTCCTCCTCCTCCTCCTCCTCCTCCTCCTCTCCTTCAACCTCCACCACCGAACAACCACCACCACCGTCGCCGCAAGATGTCCCTGTTGAAGAGCCACCAGTAATTCTGAAAACACCAGAAGAAGTGCTGGCTGAACTCACTGAAAGCGGGGAAAGCCCGCCGCCTCCTCCGCCTTCGGCCGCAGAAGAAGGAGGGATTGGCGGGTCTGCTATGGCAATAGCGGTTGGTGTTGGTGGAGAGGGAGTGGTGTTAGGTGAAGCGGGTTCCGGTGGGAGTGGTGCAGTTGGTGCAAGTAGAAAGAGAAAGGCATCGGAAGTGAAGGACCCTCCAACTGGAACACCAACATGCCCAGTTTGTAACAAAACTTTTGCAAGTTGGAAAGGTGCTTTTGGACACATGAGGAAGCACCCTGATCGCCAGTACCGTGGCTTCTTCAAGCCACCAACTTTCACGTCCTCTGTCGCCGCCGCCGCTACTAGTGGTGCCACCACCCAGGGCTTTGTGGAGGGAGGAAGTAGTGCCGCTTCTGGCGAAGGAGGAAGTGTTGGCGCCGCCGGCCAAGTTGGAGAAGGCGGATCATTTGATCTCAATCAACCAGTAATGGAGAGAGGAGGAGCAGGCGATGGTGACGAAGGAAGGAACGGTGATGAAGGAAAAGATTTAGGGTTTGATCTCAATAAGCCTGCCGATGAAGAAGATAAGGCATGA 732 0.5451 MDKNASSSSSSSSSSSSSPSTSTTEQPPPPSPQDVPVEEPPVILKTPEEVLAELTESGESPPPPPPSAAEEGGIGGSAMAIAVGVGGEGVVLGEAGSGGSGAVGASRKRKASEVKDPPTGTPTCPVCNKTFASWKGAFGHMRKHPDRQYRGFFKPPTFTSSVAAAATSGATTQGFVEGGSSAASGEGGSVGAAGQVGEGGSFDLNQPVMERGGAGDGDEGRNGDEGKDLGFDLNKPADEEDKA 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00319 243 ProSitePatterns Zinc finger C2H2 type domain signature. 124 144 IPR013087 -
Aip05g00319 243 MobiDBLite consensus disorder prediction 90 123 - -
Aip05g00319 243 MobiDBLite consensus disorder prediction 214 243 - -
Aip05g00319 243 MobiDBLite consensus disorder prediction 23 37 - -
Aip05g00319 243 PANTHER TRANSCRIPTION REGULATORY PROTEIN SNF2-LIKE 2 241 - -
Aip05g00319 243 MobiDBLite consensus disorder prediction 1 75 - -
Aip05g00319 243 MobiDBLite consensus disorder prediction 1 22 - -
Aip05g00319 243 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 2 241 - -
Aip05g00319 243 MobiDBLite consensus disorder prediction 172 243 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00319 Aip-Chr5 3594982 3596158 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00319 118 201 C2H2 Transcription Factor Family AT4G35280 36.905 1.64e-09 55.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g00319 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00319 - - adu:107487295 137.887