Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00318 ATGGAGAAGAACCATTCTACCTCTGCTTCCACCACCTCACTTCCATCCTTGTCCCTTTCAACTCCCGTTACTGAACCACCATCTTCACCACTTGTTGATCAACCCAACTTAAGTGGTGAAGAAGAAAAACTAAACATTCTTAAGACTCCTGAGAAAATTCTCACGGATCTCACAACAAATAATGATGCTAACGGAGGAAGCGCCCTTCCACCATCATCACCACCACCATCACCACCGCAGATGATGGTAAGTGGGGCTATTGCAACTGCGGTGGGTGGTGGTGCAGTGGTTTTGGGTGGTAATAACATTATTGGTCCTATTAAAAGGCGAAAGGCTTCCGAAATTATGGATCCTCCAAGCGGTACACCAACATGTCCAATTTGTAGCAAAACATTTTCGAGTTGGAAGGGAGCTTTTGGACATATGAGAAAACACCCTGATCGCCAGTACCGTGGCTTCTTCAAGCCACCTACTTTCGCCCCTTCCTCTTCAAAGGCCGCCACCAATGCTAGTGGCAACCGTCACGAGGCTGCTGGCGAAGAAGGAAGCAGTGCTGCCTCCGGCGAGGTTGGAGAAGGTGGAGCTTCACCGGCGGTTCGCAACCTGCTGTTTGACCTCAACCACCCAGTGGAGGGAGTCAAAGATGAGGAAGAAGGCAAAATCATTTTAGGATTTGATCTAAATGAGCCTGCTGTCGAAGAAGAAGAGGAGGAGAAAGAAGACAAGCCATTTTAA 735 0.483 MEKNHSTSASTTSLPSLSLSTPVTEPPSSPLVDQPNLSGEEEKLNILKTPEKILTDLTTNNDANGGSALPPSSPPPSPPQMMVSGAIATAVGGGAVVLGGNNIIGPIKRRKASEIMDPPSGTPTCPICSKTFSSWKGAFGHMRKHPDRQYRGFFKPPTFAPSSSKAATNASGNRHEAAGEEGSSAASGEVGEGGASPAVRNLLFDLNHPVEGVKDEEEGKIILGFDLNEPAVEEEEEEKEDKPF 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00318 244 MobiDBLite consensus disorder prediction 52 68 - -
Aip05g00318 244 MobiDBLite consensus disorder prediction 1 35 - -
Aip05g00318 244 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 108 242 - -
Aip05g00318 244 MobiDBLite consensus disorder prediction 229 244 - -
Aip05g00318 244 MobiDBLite consensus disorder prediction 211 244 - -
Aip05g00318 244 MobiDBLite consensus disorder prediction 1 80 - -
Aip05g00318 244 PANTHER TRANSCRIPTION REGULATORY PROTEIN SNF2-LIKE 108 242 - -
Aip05g00318 244 MobiDBLite consensus disorder prediction 156 196 - -
Aip05g00318 244 ProSitePatterns Zinc finger C2H2 type domain signature. 125 145 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00318 Aip-Chr5 3589307 3591955 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00318 117 198 C2H2 Transcription Factor Family AT4G35280 35.294 1.47e-08 52.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Aip05g00318 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00318 - - adu:107487295 338.961