Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00317 ATGGAAGAAAAATATGATTTAATATCGGAAGTAAATTCCAATAGGATTTCGTGGAGTTTTAAAGTATATATTGTTAGGATATGGGAGGAGCCTAGCAAATACAACAAACAAGAAACTTGGTCTATTGAAATGGTTTTGCAAGACAATAAGGGAGATAGGATTTACTCTACTGTGCCAAGAGCTTTGGTTCAGAAGTGGACTCCGATTCTGCACGAGTTTCAAATGTATACAATGACAAATTTCATAGTAGTTGACAACAAGACAGAGGCAAAAAATGGTGTCAGTAGGTATGTGTTAACATTCTCGCACAGAACCAAAGTTACTCATGTGGAGGTCCCTACATTCCCTTTACAAGCGTTTCGCTTTCGTTCATTTGTTGATCTCCAAAATGCTGCCATGCTTGGAGATGCTGATATGTTTGTGGGAAAGGAAGAACCAAGAGATCTAGTAACTAGCAAGGGGAGGGAGACCAAGCGATTGGTGGTTATTCTCCAAGATTTAGACAACAACCGGATGAGCTGCACTTTGTTTGGTGACCTGGTGGACCAAATCGTACCTCACCTACAGGAAGAGAGGGTAGAACAACTCATCGTGGTTCTGCAGTACTTTAAGGGATCCAGGTGGAATGGAAAAACATCTGTTCAAAGCAATTTTGCAATATCCAAGGTCCACATCAACCCGGATCTAGAAGAAGTCAATTTTTTCAAGACCAGAGTTGTTAGTGCTGGCCCATCAAGCGCATCCAAAATAAGCCATGTATCATCTCCTAGGGCTTGGTCTGCAGCAGACGAGCTTAAGAATGGTTGTGTCGTTGTCAAAACAATAGAAGAAGCTCTTAATGTTGCTCAGGAAGGTCCGATATGGATCGCTGGCACCATTGTATCCATTAATGCTGGAAAGGCAGGTTGGTTTTATAAGGCATGTCGAAGGTGCCTAAAGAAGGTTGAAACCCCTGTTGGTACTAGATATGAATGTGCAAAGTGCGGCCACACACATGGAGTAGCTGCACTTAGGTACAAGGTTGAAGTTATGGCTCATGATGGGACAGGTAGCATTTGTTTGCTACTGTGGGACAGGGAGACCACGCAGTTGTGCGGAAAGCCAGCTGAGTCAATCTTTAATGAGATTGCTCCAGACGATGAGTATCCACATACGCTGGACAACATGATGGACAAAAAGGTGCTGTTTAAGCTTAATGTTAAGGCTGCAAATGTCAAGCAGTACAATCCAGTCTACACTGTGATGAAGGTGTGTGATGATGAGGATACCATATCGAAGAACCTCCCAATGACTTTAGTCGACAATAATACTCATGCAGTTAATGAGGCTGGGAACAATAATTCGTTCGATATATCAGGCATTGTTGTTAATCTTACGATTGACATTGATACTCACTCTACTATGGATTTTACTGAGGAATGTGTTAGTAGCATCAAGTTCAAAACTCCAGCTAAAAGAGTTGCCAGTGGTGTAAAGGTTGCAACTATCAATCTCAACCAGGATGAGGAGGAAGTTCAGCACTCCACCAATAGATTTACTCGCAAGCTTTCTAAGAAGATGAAATCCCAACGGTCAGATATTGATAGTTAA 1590 0.4195 MEEKYDLISEVNSNRISWSFKVYIVRIWEEPSKYNKQETWSIEMVLQDNKGDRIYSTVPRALVQKWTPILHEFQMYTMTNFIVVDNKTEAKNGVSRYVLTFSHRTKVTHVEVPTFPLQAFRFRSFVDLQNAAMLGDADMFVGKEEPRDLVTSKGRETKRLVVILQDLDNNRMSCTLFGDLVDQIVPHLQEERVEQLIVVLQYFKGSRWNGKTSVQSNFAISKVHINPDLEEVNFFKTRVVSAGPSSASKISHVSSPRAWSAADELKNGCVVVKTIEEALNVAQEGPIWIAGTIVSINAGKAGWFYKACRRCLKKVETPVGTRYECAKCGHTHGVAALRYKVEVMAHDGTGSICLLLWDRETTQLCGKPAESIFNEIAPDDEYPHTLDNMMDKKVLFKLNVKAANVKQYNPVYTVMKVCDDEDTISKNLPMTLVDNNTHAVNEAGNNNSFDISGIVVNLTIDIDTHSTMDFTEECVSSIKFKTPAKRVASGVKVATINLNQDEEEVQHSTNRFTRKLSKKMKSQRSDIDS 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00317 529 Pfam Replication factor-A C terminal domain 290 417 IPR013955 -
Aip05g00317 529 SUPERFAMILY Nucleic acid-binding proteins 273 418 IPR012340 -
Aip05g00317 529 Gene3D - 114 248 IPR012340 -
Aip05g00317 529 SUPERFAMILY Nucleic acid-binding proteins 4 110 IPR012340 -
Aip05g00317 529 PANTHER REPLICATION PROTEIN A 70 KDA DNA-BINDING SUBUNIT A-LIKE 18 443 - -
Aip05g00317 529 MobiDBLite consensus disorder prediction 507 529 - -
Aip05g00317 529 CDD RPA1_DBD_C 272 417 IPR013955 -
Aip05g00317 529 Gene3D - 263 428 IPR012340 -
Aip05g00317 529 CDD RPA1_DBD_A_like 21 107 - -
Aip05g00317 529 Pfam Domain of unknown function DUF223 43 116 IPR003871 -
Aip05g00317 529 Gene3D - 7 111 IPR012340 -
Aip05g00317 529 PANTHER REPLICATION FACTOR A 1, RFA1 18 443 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Aip05g00317 529 CDD RPA1_DBD_B_like 141 239 - -
Aip05g00317 529 SUPERFAMILY Nucleic acid-binding proteins 142 238 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00317 Aip-Chr5 3573965 3576617 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00317 114 373 Core DNA Replication Machinery Family AT2G06510 25.547 4.51e-12 66.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00317 - - adu:107477039 595.89