Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00309 ATGTCGTCGCAGGTAGCATTCACTACCTTCGACGTCGTCGCTCAGCACCCACATTGCAACCGCAGTGACCTGTGCCATCACATTTTCGGTATCGACcaagCAAGAACACAGCAAAGAGGAGAGGACTCACCTACCAGAATCTTCAGCGAGCACGGAAGAGCAGAGGAAGGCGACCACGACAGAGCAGAGGGGGCTGGAGAAATTGCGGCGAACACGGCAGAGCAGAGGGAGGCGACCATGGCAGAGCAGAGGGGGCTGGAGAAATTGCGGCGAGCATGGCAGAGCAGAGGGATACCTGTGACGAAGGAGAACGAGGAGCGACCGACCACTAATGGACGACGCACACGAACGGCGGCTGCGGTGGTCAAACCCGTTGCTGCTATGGATGCGGGACGCGGAGGCTGCGAGACGCGGAGGCTGCGGGATGCGGTGGCGGTGGGCTGCTCGACTGGTGGTGCACAACACATTCTCTTCCTCACCCACTCTCTTCCCCCAGATCCTATCACACATACTCTCTCTCTTTTTCTCCCAAGGTTCAACATGCCGAAGGCAAGGACTAACGTCAAAGCTGCTGACAACAGGTTGAGCCGCAAGGACAGTGGAATCGGAACGAAGAAGGCGAAGAAGAAAGCTGCTCCGAAGGATCCGAACAAGCCTAAGAGGCCTCCTTCTGCTTTCTTCGTTTTCATGTCTGACTTCAGAGAGGAGTATAAGAAGGAGAATCCGAACAACAAATCCGTTGCTCTTGTTGGAAAAGCTGGTGGCGCTAAGTGGAAGTCCATGTCCGATGCTGAAAAAGCTCCATACCAAGCAAAAGCTGAGAAGAACAAACTAGCATATGATGAGGATATCAGGGCCTACAACAAAGGACTGAATGAGGGTGGAGATTCTGACAAGTCGAAATCTGAGGTGAATGACGATGATGATGATGAGGAGGATGAGTGA 945 0.5354 MSSQVAFTTFDVVAQHPHCNRSDLCHHIFGIDQARTQQRGEDSPTRIFSEHGRAEEGDHDRAEGAGEIAANTAEQREATMAEQRGLEKLRRAWQSRGIPVTKENEERPTTNGRRTRTAAAVVKPVAAMDAGRGGCETRRLRDAVAVGCSTGGAQHILFLTHSLPPDPITHTLSLFLPRFNMPKARTNVKAADNRLSRKDSGIGTKKAKKKAAPKDPNKPKRPPSAFFVFMSDFREEYKKENPNNKSVALVGKAGGAKWKSMSDAEKAPYQAKAEKNKLAYDEDIRAYNKGLNEGGDSDKSKSEVNDDDDDEEDE 314
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00309 314 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 184 313 - -
Aip05g00309 314 SMART hmgende2 218 289 IPR009071 -
Aip05g00309 314 CDD HMGB-UBF_HMG-box 219 285 - -
Aip05g00309 314 MobiDBLite consensus disorder prediction 187 224 - -
Aip05g00309 314 MobiDBLite consensus disorder prediction 268 302 - -
Aip05g00309 314 ProSiteProfiles HMG boxes A and B DNA-binding domains profile. 219 288 IPR009071 -
Aip05g00309 314 MobiDBLite consensus disorder prediction 252 314 - -
Aip05g00309 314 MobiDBLite consensus disorder prediction 190 210 - -
Aip05g00309 314 Pfam HMG (high mobility group) box 219 288 IPR009071 -
Aip05g00309 314 Gene3D High mobility group box domain 203 302 IPR036910 -
Aip05g00309 314 PANTHER HIGH MOBILITY GROUP B PROTEIN 4-RELATED 184 313 IPR031061 -
Aip05g00309 314 SUPERFAMILY HMG-box 210 293 IPR036910 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00309 Aip-Chr5 3477174 3482577 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR HMG Aip05g00309 HMG_box 4.2e-22 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00309 K25507 - aip:107641626 219.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00309 05 3477174 3482577 Aip05g00309 05 3477174 3482577 ECH