Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00305 ATGCTCAACTTAGGAAAGCATCAAGTTGAAGCTTTTAGAGATGAGATAGGAACTTTGATGAAGTCCTTGAATTTTGCATTGAGTAACTTAAAATATTGGATATCAGGCAAAAAGGCTAAATTGCCACAAATAGCACTGCTTAGTAGTGCAGAAATTGTTCCTGAACCTCTGGGCCTAGTCCTCATTATTTCATCTTGGAATTTCCCCTTTGGTTTATCCTTGGAGCCACTAATAGGAGCAATAGCAGCTGGAAACACAGTGGTCTTAAAGCCTTCAGAGTTGTCACTAGCATGTTCTTCCATACTTGCCCTTGGACTTCCCAATTTCTTGGACAACAAAGCCATTAAGGTTGTACAAGGAAGTGCACGTGTGGAGAAGATTGTGATGTCAGCAGCAGCCAAGCATTTGACTCCTGTGACTTTGGAGTTGGGTGGGAAATGTCCTGCAGTTGTTGATTCACTTTCATCTTCTTGGGACTTGGAGGTAGCGGTGAAGCGGATTCTAGTGGGAAAATATGGGGCATGTGGTGGTCAAGCATGCATAGCAATTGACTATGTCCTCATGGAAAATCAATACTATCCAAAACTGGTAGAATTGATGAAACTATGGATCAAGAAAATGTTTGGGGAGAACCCAAAAGACTCCAACACCATTGCGAGGATAGTTAATAAACAACACTTGTCTAGATTGAAGAATCTTTTGGCTGATCCAGAGATCAAGAAATCTGTGGTTTATGGAGGATCTATGGACGAAAGATTTATTGAGCCAACAATCTTGTTGAATCCCCCACTTGAATCAGCAATCATGACAGAAGAAATTTTTGGCCCATTGCTTCCAATTATTATCGTAAGATTTGAAAGTCTGCGGAAGCTTGAGGAACAACATGAATGGTTGAGGGGTGGAAAGCTCTGCGGAAAGCTCTGTGATTATCATGTTTGTAGTTGGAGAAATGATACAAATGTCATTTTAGCTGATGAAATGGGTCTTGGTAAAACTGTTCAGTCAGTTTCGATGCTTGGTTTTCTTCAGGTTTGTCAACAATATGAATTTTACAATGATAAAAAGCCTGGAAAACCTATTAAGTTCATTGTGCTGTTGACTACAGATGAAGTAGTTGAAACAATTGTTGAAGAAGATACACACAGCGAGACCAGTACCCCACACTTCAATGACTGTGCTGGGGACTCCCTTATTGAAGAACCTATTGACCAACAAGGGGAACATGAGCTCAATGAAGAGATTGAAGAGTACATCGCTGATGATGCATCAGAACCAAGTGTAGTAGAAACAACGCCGATTTCTGATCTACCACTAGTCACGATGGACGTTCCACTTGGTCGGGGTCACCGCATGAAGACACCCTCAGTCAGGTTGTGCGATTTTGTCTCTGCTGCTACGATACCAATAGGCTCTACCGACCAACTTTCCTCTCCATTAAAATTCTCAGTTAGAGATGAGCGTTGGTGCGAAGTGATGTCCCAAGAAATTCGTGCACTTCAACTCAATGACACTTAG 1515 0.4165 MLNLGKHQVEAFRDEIGTLMKSLNFALSNLKYWISGKKAKLPQIALLSSAEIVPEPLGLVLIISSWNFPFGLSLEPLIGAIAAGNTVVLKPSELSLACSSILALGLPNFLDNKAIKVVQGSARVEKIVMSAAAKHLTPVTLELGGKCPAVVDSLSSSWDLEVAVKRILVGKYGACGGQACIAIDYVLMENQYYPKLVELMKLWIKKMFGENPKDSNTIARIVNKQHLSRLKNLLADPEIKKSVVYGGSMDERFIEPTILLNPPLESAIMTEEIFGPLLPIIIVRFESLRKLEEQHEWLRGGKLCGKLCDYHVCSWRNDTNVILADEMGLGKTVQSVSMLGFLQVCQQYEFYNDKKPGKPIKFIVLLTTDEVVETIVEEDTHSETSTPHFNDCAGDSLIEEPIDQQGEHELNEEIEEYIADDASEPSVVETTPISDLPLVTMDVPLGRGHRMKTPSVRLCDFVSAATIPIGSTDQLSSPLKFSVRDERWCEVMSQEIRALQLNDT 504
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00305 504 Gene3D - 313 344 IPR038718 -
Aip05g00305 504 Pfam Aldehyde dehydrogenase family 118 284 IPR015590 GO:0016491
Aip05g00305 504 PANTHER ALDEHYDE DEHYDROGENASE 119 284 - -
Aip05g00305 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 2 145 284 IPR016163 GO:0016620
Aip05g00305 504 PANTHER ALDEHYDE DEHYDROGENASE 3 120 - -
Aip05g00305 504 Pfam SNF2-related domain 307 349 IPR000330 GO:0005524|GO:0140658
Aip05g00305 504 PANTHER ALDEHYDE DEHYDROGENASE 119 284 IPR012394 GO:0006081
Aip05g00305 504 SUPERFAMILY ALDH-like 2 284 IPR016161 GO:0016491
Aip05g00305 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 122 144 IPR016162 GO:0016491
Aip05g00305 504 Gene3D Aldehyde Dehydrogenase; Chain A, domain 1 3 121 IPR016162 GO:0016491
Aip05g00305 504 PANTHER ALDEHYDE DEHYDROGENASE 3 120 IPR012394 GO:0006081
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00305 Aip-Chr5 3397217 3401764 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00305 3 284 Aldehyde Dehydrogenase Gene Family AT4G36250 51.974 2.18e-106 324
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Aip05g00305 Aldedh 7e-28 CL0099
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00305 K00128 - gmx:100817701 436.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00305 05 3397217 3401764 Aip05g00305 05 3397217 3401764 ECH
Aip05g00305 05 3397217 3401764 Aip08g03187 08 122603627 122613475 ECH