Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Aip05g00296 ATGTCGTGCTCATCGTCGTCGGGGTCGGAGGAGGACGATGAGGGTTTCGATTCGTACCGGAAAGGAGGGTACCATGCTGTCAGAATCGGCGATCAGTTCGCCGGTGGAAGGTACATAGCTCAGAGGAAGCTCGGTTGGGGCCAATTCTCCACCGTTTGGCTTGCTTACGATACCACCAATTCCTCATATGTTGCTCTCAAGATCCAAAAAAGTGCAGCCCAGTTTGTTCAGGCAGCACTTCATGAGATTGATGTTCTTTCATACATTTCTAAGGGTGACCCTTCAAATTCAAAGTTTGTTGTTCAATTAATTGACCACTTTAAACACACTGGCCCGAATGGGCAGCACCTTTGCATGGTCCTCGAGTTTCTTGGTGATAGCTTGCTACGTCTGATCAAATATAACCGATACAAATGCCTTCCATTGAATAAAGTTAGGGAAATGTGCAAATACATTTTGATTGGTTTGGATTACTTGCACAGAGAACTTGGTCTAATCCACACTGACCTCAAACCTGAAAATATTCTTCTACTTTCAACCATTGATGCTGCCAAAGACCCTTTTAAATCTGGACAATCCCCAATTCTGGAGAGGCCCGAGGGAAACATCAACGGTGGAGTCACAAGTCTTATTGAGAAAAGATTGAGAAGGAGAGCTAAGAGGGCTGTTGCTAAGATATCCGAAAAAAGATCCTCAATGGGTGTAGCTGGAGAAGAGCAAAAGTCTACTAGAAACATTGATGGGATTGATATGAGATGCAAGATTGTAGATTTTGGAAATGCATGTTGGGCTGACAAGCAGTTTGCTGAAGAAATACAGACAAGGCAATACAGAGCTCCTGAAGTTATACTGCAGTCCGGCTATTCCTTCTCTGTTGACATGTGGTCTTTTGCTTGCATTGCTTTCGAGCTTGCCACTGGTGATATGTTGTTTACGCCCAAGGGTGGTCAAGGTTTTAGTGAAGATGAGGATCATCTCGCCTTGATGATGGAGCTCCTCGGAAAGATGCCCCGGAAGATTGCGATTTCTGGAGCACAATCCAAGGAATTCTTTGACAGGCATGGTGATCTGAAAAGGATCCGGAGGCTAAAATTTTTGGCACTTGACAAATTGCTGATTGATAGATATAAGTTTCCAGAGACTGACGCACGTGAGTTTACCGAATTTCTTACACCACTTCTTGATTTTGCACCGGAGAAGCGACCAACTGCACAACAGTGCTTGCAACACCCATGGATGAATCGCGAGTTATCTCCGAACGAGAATGAGTCTAGTGTCGAAACCGTGGAAGTTGGGATGAGCAACCTTAAACTCAAGGTGGGAAAGTGA 1329 0.4477 MSCSSSSGSEEDDEGFDSYRKGGYHAVRIGDQFAGGRYIAQRKLGWGQFSTVWLAYDTTNSSYVALKIQKSAAQFVQAALHEIDVLSYISKGDPSNSKFVVQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIKYNRYKCLPLNKVREMCKYILIGLDYLHRELGLIHTDLKPENILLLSTIDAAKDPFKSGQSPILERPEGNINGGVTSLIEKRLRRRAKRAVAKISEKRSSMGVAGEEQKSTRNIDGIDMRCKIVDFGNACWADKQFAEEIQTRQYRAPEVILQSGYSFSVDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIAISGAQSKEFFDRHGDLKRIRRLKFLALDKLLIDRYKFPETDAREFTEFLTPLLDFAPEKRPTAQQCLQHPWMNRELSPNENESSVETVEVGMSNLKLKVGK 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Aip05g00296 442 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00296 442 Pfam Protein kinase domain 252 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00296 442 ProSiteProfiles Protein kinase domain profile. 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00296 442 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Aip05g00296 442 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Aip05g00296 442 Gene3D Transferase(Phosphotransferase) domain 1 92 413 - -
Aip05g00296 442 SUPERFAMILY Protein kinase-like (PK-like) 32 421 IPR011009 -
Aip05g00296 442 CDD STKc_SRPK 27 413 - -
Aip05g00296 442 SMART serkin_6 38 413 IPR000719 GO:0004672|GO:0005524|GO:0006468
Aip05g00296 442 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Aip05g00296 442 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 442 - -
Aip05g00296 442 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 442 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Aip05g00296 Aip-Chr5 3170250 3174111 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Aip05g00296 4 414 EF-hand Containing Proteins AT5G22840 51.293 1.66e-168 483
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Aip05g00296 Pkinase 5.5e-24 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Aip05g00296 K08832 - gmx:100784192 719.924
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Aip05g00296 05 3170250 3174111 Aip10g00077 10 699254 704339 PCT